BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0071.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   622   e-179
gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   247   1e-66

>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  622 bits (1604), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 315/342 (92%), Positives = 327/342 (95%)

Query: 1   MTTKLSAKGRLRRLLTTTVAVSLLGAPLVARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK 60
           MT   S K RLRRLLT T+A+SLLGAPL+ARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK
Sbjct: 1   MTLFPSFKERLRRLLTATLALSLLGAPLMARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK 60

Query: 61  HGKAAGVDIKVQWLKLSGGSAVNDALLSGSVDIAGAGVGPLLTIWDRTRGRQNVRGVASL 120
           HGKAAGVDIKV+WLKLSGGSA+NDALLSGSVDIAGAGVGPLLTIWDRT GRQNVRG ASL
Sbjct: 61  HGKAAGVDIKVEWLKLSGGSAINDALLSGSVDIAGAGVGPLLTIWDRTYGRQNVRGAASL 120

Query: 121 GNFPYYLVSNNPKVKTIADFSDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNRLDKIS 180
           GNFPYYLVSNNPKVKTIADFSDKDRIA+PAVGVSVQSRVLQLASAKLWGDAQYNRLDKIS
Sbjct: 121 GNFPYYLVSNNPKVKTIADFSDKDRIALPAVGVSVQSRVLQLASAKLWGDAQYNRLDKIS 180

Query: 181 IAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLYA 240
           IAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVL SYDVLGGPSSATVLYA
Sbjct: 181 IAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYA 240

Query: 241 TEKFRQDNPKTYGAFLGALDEAARFIAANPEKAADIYLKVSQGNTDRKLLLQIIKNPEVQ 300
           TEKFR+DNPKTY AFL AL+E A FI ANP+KAADIYLKV++GNTDRKLLLQIIKNPEVQ
Sbjct: 241 TEKFRKDNPKTYRAFLDALEETASFIRANPDKAADIYLKVNKGNTDRKLLLQIIKNPEVQ 300

Query: 301 FKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDVHIQGGS 342
           FKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDD H+QGGS
Sbjct: 301 FKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDPHVQGGS 342


>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  247 bits (630), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/338 (39%), Positives = 209/338 (61%), Gaps = 9/338 (2%)

Query: 12  RRLLTTTV---AVSLLGAPLVARAEGQ-LRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGV 67
           RR  T+ +   A++L G    A AE Q +RI+  +G++YL L V +DQ L+EKH KA G+
Sbjct: 6   RRTFTSLMIASALALSGVSGTAHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAMGL 65

Query: 68  -DIKVQWLKLSGGSAVNDALLSGSVDIAGAGVGPLLTIWDRTRG--RQNVRGVASLGNFP 124
            ++K +W+ L GG+ +NDA+L+G++DIAG G    +T+W +  G  R  V G+ +L   P
Sbjct: 66  GEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALSTSP 125

Query: 125 YYLVSNNPKVKTIADFSDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNRLDKISIAVP 184
            +L +NNP VK++ DF+ KD+IA+P +  S+ + +LQ+A+AK +G   Y +LD +++++ 
Sbjct: 126 LWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVSLS 185

Query: 185 HPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLYATEKF 244
           HP+A A+++SG TEIT HF +PPF  QE A  P    VLNS DVLG   +  V++A + F
Sbjct: 186 HPEAMASLVSGKTEITAHFTSPPFSYQE-AKAPGITRVLNSTDVLGH-ITIDVVFALKSF 243

Query: 245 RQDNPKTYGAFLGALDEAARFIAANPEKAADIYLKVSQGNTDRKLLLQIIKNPEVQFKIA 304
              NPK   AF+ A +EA  +IA N + AA+I+L+VS+    ++ + Q++ +P  +F   
Sbjct: 244 TDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEFTST 303

Query: 305 PQNTYGLAEFMHRVGAIKNKPASVKDYFFDDVHIQGGS 342
           P +      FM + G IK KPA   + F      + GS
Sbjct: 304 PVDIMQYVVFMSKAGTIKTKPAVWHEMFVPAFKERKGS 341


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,106,482
Number of extensions: 47406
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)