BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0069.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 497 e-142 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 320 6e-89 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 207 1e-54 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 196 2e-51 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 172 3e-44 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 497 bits (1279), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/290 (86%), Positives = 265/290 (91%), Gaps = 1/290 (0%) Query: 1 MHNPAVETASVSAAAAFKPLLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSG 60 MH E S++A PLLQV VSLQYRSATAVVQATH+VSFDV+ ADRFVLLGPSG Sbjct: 1 MHVSTHEITSLAAQDLPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSG 60 Query: 61 CGKSSLLKSVAGFLPPAAGDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLL 120 CGKSSLLKSVAGFLPPAAG+IRLDGQ++ QPGPDRIVVFQEFDQLPPWKTVL NVMFPLL Sbjct: 61 CGKSSLLKSVAGFLPPAAGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLL 120 Query: 121 ASRTLGKREAAERARHYLDKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEP 180 ASRTLGKR+AAERARHYLDKVGLA FA+AYPHTLSGGMKARVAIARALAMQPKMLLMDEP Sbjct: 121 ASRTLGKRDAAERARHYLDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEP 180 Query: 181 FAALDALTRRKMQEELLALWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS 240 FAALDALTRRKMQEELLALW+EVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS Sbjct: 181 FAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS 240 Query: 241 HQYDLGSLGGVGFQQTAQRIHRLLFEDGEGS-AAPAPQPAINFSDVRFSY 289 HQYDL SLGGVGFQQTAQRIHRLLF++G S AA A P +NFSDVRFSY Sbjct: 241 HQYDLSSLGGVGFQQTAQRIHRLLFDEGGPSDAASAAAPTLNFSDVRFSY 290 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 320 bits (821), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 154/248 (62%), Positives = 194/248 (78%), Gaps = 2/248 (0%) Query: 18 KPLLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPA 77 +PLL++ V+LQY++ ++V AT VSF+VH DR++LLGPSGCGKS+LLK++ G+L P Sbjct: 15 RPLLEIDRVTLQYKTTDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPT 74 Query: 78 AGDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAERARHY 137 +G IRL G+ V +PGPDR++VFQEFDQL PWKTV NV F L AS L R AAERA +Y Sbjct: 75 SGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAAERAEYY 134 Query: 138 LDKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELL 197 + KVGLA F ++YPH LSGGMK RV+IAR +AM+P +LLMDEPFAALDALTRRKMQ+ELL Sbjct: 135 ISKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELL 194 Query: 198 ALWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLGSLGGVGFQQTA 257 LW++ +FT+LFVTHSIEEA+ VG RILLL+PHPG+VRAE+NS D LG + Sbjct: 195 RLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNS--IDPSQLGTAAQAELE 252 Query: 258 QRIHRLLF 265 RI+ +LF Sbjct: 253 TRINDMLF 260 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 207 bits (526), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/220 (47%), Positives = 147/220 (66%), Gaps = 2/220 (0%) Query: 19 PLLQVQHVSLQYRSATAVVQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 P +++Q V +++ V A D++ D+ LLGPSGCGKS+LL ++AGF P++ Sbjct: 8 PRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSS 67 Query: 79 GDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAERARHYL 138 G I D ++V +PGPDR +VFQE+ L PW TV NV F L T K E +R L Sbjct: 68 GQILTDDKVVSEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGT-PKAEIHQRVTQLL 125 Query: 139 DKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 DK+GL F +P LSGGM+ RVAIAR LA+ ++LMDEPF ALDALTRR +Q+ELL Sbjct: 126 DKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR 185 Query: 199 LWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEI 238 +W+E R T++FVTHSIEEA+ + +RI++++ PG V+ ++ Sbjct: 186 IWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDM 225 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 196 bits (498), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/222 (47%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 20 LLQVQHVSLQYRSATAV-VQATHDVSFDVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 +L+V++ S+ + V A VS D+ V LG SGCGKS+LL ++AGFLP + Sbjct: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 Query: 79 GDIRLDGQMVRQPGPDRIVVFQEFDQLPPWKTVLHNVMFPLLASRTLGKREAAERARHYL 138 G I LDGQ V PG +R VVFQ+ D L PWK+V NV L + + K ++ ERA+ L Sbjct: 61 GRISLDGQPVSGPGAERGVVFQK-DSLLPWKSVQDNVALGLKFA-GVSKSDSRERAQELL 118 Query: 139 DKVGLAHFANAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 VGL FA A P+ LSGGM+ RV +ARALA PK+LLMDEPF ALD++TR +MQE L++ Sbjct: 119 RLVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVS 178 Query: 199 LWEEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS 240 +W + F+THSIEEAL +G ++++SP PGR+ A + Sbjct: 179 VWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFET 220 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 127/194 (65%), Gaps = 2/194 (1%) Query: 46 DVHTADRFVLLGPSGCGKSSLLKSVAGFLPPAAGDIRLDGQMVRQPGPDRIVVFQEFDQL 105 ++ + + L+GPSGCGKS+LL AG P++G + DGQ +R P P+R ++FQE + L Sbjct: 24 EIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMFQE-NAL 82 Query: 106 PPWKTVLHNVMFPLLASRTLGKREAAERARHYLDKVGLAHFANAYPHTLSGGMKARVAIA 165 PW T+ NV L +++ K++AAE+AR +L+ V L F + YPH +SGGM+ R A+A Sbjct: 83 YPWLTLQQNVALAL-EFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQRAALA 141 Query: 166 RALAMQPKMLLMDEPFAALDALTRRKMQEELLALWEEVRFTLLFVTHSIEEALVVGNRIL 225 RA QPK LL+DEPF ALDALTR +Q+ L L + T++ VTH ++EAL + +RI Sbjct: 142 RAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLADRIF 201 Query: 226 LLSPHPGRVRAEIN 239 + SP P +V E N Sbjct: 202 VFSPRPAKVLKEFN 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 896,094 Number of extensions: 37053 Number of successful extensions: 476 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 339 Number of HSP's successfully gapped: 128 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)