BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0064.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309399|ref|YP_003773491.1| hypothetical protein Hsero_0053...   173   4e-45

>gi|300309399|ref|YP_003773491.1| hypothetical protein Hsero_0053
           [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  173 bits (438), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/121 (75%), Positives = 102/121 (84%), Gaps = 3/121 (2%)

Query: 1   MSMATRHPDVRSSPSLPPLPGIAASPVRERSRYQQRTAPLLLRLVELDPREVVEGVMTPN 60
           MS+ATR PDVR SP  P      +  + ER RY+QRT PLLL+LVELDPREV++G+MTP 
Sbjct: 1   MSIATRPPDVRPSPLPP---LSPSPRLPERPRYEQRTTPLLLKLVELDPREVIDGIMTPG 57

Query: 61  GYLTAEVTPVGPMREACPHCEGVALQLVLRHHHVKRSHLFCRSCTRVYDALNESGYSVLT 120
           GYLTA+V PVGPMREACPHCEGVALQLVLRH HV+RSHLFCR CTRVYDALN+SGYSVLT
Sbjct: 58  GYLTADVIPVGPMREACPHCEGVALQLVLRHRHVRRSHLFCRVCTRVYDALNDSGYSVLT 117

Query: 121 V 121
           V
Sbjct: 118 V 118


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 383,784
Number of extensions: 14351
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)