BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0062.p
         (609 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309397|ref|YP_003773489.1| ferrous iron transport B transm...  1110   0.0  

>gi|300309397|ref|YP_003773489.1| ferrous iron transport B
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 608

 Score = 1110 bits (2872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/609 (94%), Positives = 585/609 (96%), Gaps = 1/609 (0%)

Query: 1   MKGAALNIALVGNPNCGKTALFNQLTGARQKVANYAGVTVERKSGAFTAPSGRQVRVVDL 60
           M  A LNIALVGNPNCGKTALFNQLTGARQKVANYAGVTVERKSG+FTAPSGRQVRVVDL
Sbjct: 1   MSAAGLNIALVGNPNCGKTALFNQLTGARQKVANYAGVTVERKSGSFTAPSGRQVRVVDL 60

Query: 61  PGAYSLQSVSPDERVTQAVLQGRYPGEAVPDLIVCVADATNLRLHLRFVLEVRRLGLPMV 120
           PGAYSLQSVSPDERVTQAVLQGRYPGEAVPDLIVCVADATNLRLHLRFVLEVRRLG PMV
Sbjct: 61  PGAYSLQSVSPDERVTQAVLQGRYPGEAVPDLIVCVADATNLRLHLRFVLEVRRLGRPMV 120

Query: 121 LALNMMDAAARRGIRIDVAALSQRLGMPVIETVAVKRGGARALVDAIDVKQVPAAAAAVP 180
           LALNMMDAAARRGIRIDVAALSQRLGMPVIETVAVKRGGARALV AID  + P AA AVP
Sbjct: 121 LALNMMDAAARRGIRIDVAALSQRLGMPVIETVAVKRGGARALVAAIDGGE-PVAAPAVP 179

Query: 181 PIDDLHVEVRAILAATVVMPAATDRRDDAIDRIVLHPVLGLLVLALTMFLVFQAVYAIGK 240
            IDDLHVEVRA+LA TVVMPA TD RDDAIDRI LHPVLG+L+LALTMFLVFQAVYAIGK
Sbjct: 180 DIDDLHVEVRALLAVTVVMPAPTDGRDDAIDRIALHPVLGVLLLALTMFLVFQAVYAIGK 239

Query: 241 PMTDAIADGFGTLGGVVGAWLPEGPLRGLVTDGLLAGLGTVLGFLPQILVLFFFILLLEE 300
           PMTDAIADGFGTLGGVVG WLPEGPLRGLVTDGL+AGLGTVLGFLPQILVLFFFILLLEE
Sbjct: 240 PMTDAIADGFGTLGGVVGEWLPEGPLRGLVTDGLVAGLGTVLGFLPQILVLFFFILLLEE 299

Query: 301 SGYLPRAAFVLDKLMVSVGLSGRSFIPLLSSFACAIPGIMGTRSITDPRDRLATILVAPL 360
           SGYLPRAAFVLDKLMVSVGLSGRSFIPLLSSFACAIPGIMGTRSITDPRDRLATILVAPL
Sbjct: 300 SGYLPRAAFVLDKLMVSVGLSGRSFIPLLSSFACAIPGIMGTRSITDPRDRLATILVAPL 359

Query: 361 MTCSARLPVYALLIGAFIPHHPVLGIFNLQGLALFCLYVAGIAAAMLVAWVAKRIGRSRQ 420
           MTCSARLPVYALLIGAFIPH PVLG+FNLQGLALFCLYVAGIAAAMLVAWVAKRIG +RQ
Sbjct: 360 MTCSARLPVYALLIGAFIPHRPVLGVFNLQGLALFCLYVAGIAAAMLVAWVAKRIGNARQ 419

Query: 421 ERALLMELPSYRLPHWRDIALGLWERGAIFLKRLTGVMLALTVLMWAICTFPSPPADATR 480
           ERALLMELPSYR PHWRDIALGLWERGAIFLKRLTGVMLALTVLMWAICTFP+PPA ATR
Sbjct: 420 ERALLMELPSYRWPHWRDIALGLWERGAIFLKRLTGVMLALTVLMWAICTFPAPPAQATR 479

Query: 481 AAIDYSIAGYIGHSLQYLFAPLGFNWQISLSLIPAFAARETAVATLATVYAVGGEEGAAL 540
           AAIDYSIAGYIGHSLQYLFAPLGFNWQISLSLIPAFAARETAVATLATVYAVGGEEGAAL
Sbjct: 480 AAIDYSIAGYIGHSLQYLFAPLGFNWQISLSLIPAFAARETAVATLATVYAVGGEEGAAL 539

Query: 541 QQALATHISLASALSLMVWFAFAPQCMSTLAIIRRETQSWRLVALSFGYMFVLAYVASFL 600
           Q ALA+HISLASALSLMVWFAFAPQCMSTLAIIRRETQSWR+VALSFGYMFVLAY ASFL
Sbjct: 540 QSALASHISLASALSLMVWFAFAPQCMSTLAIIRRETQSWRMVALSFGYMFVLAYAASFL 599

Query: 601 TYRIAGWLA 609
           TY +A WLA
Sbjct: 600 TYNVARWLA 608


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,739,305
Number of extensions: 70265
Number of successful extensions: 454
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 518
Effective length of database: 1,188,985
Effective search space: 615894230
Effective search space used: 615894230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)