BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0060.p
         (117 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309391|ref|YP_003773483.1| hypothetical protein Hsero_0045...   145   9e-37

>gi|300309391|ref|YP_003773483.1| hypothetical protein Hsero_0045
           [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score =  145 bits (366), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/118 (67%), Positives = 89/118 (75%), Gaps = 13/118 (11%)

Query: 1   MKTRHILISTLFMALAGSAMAQN-APTSGNAVDTAPGTSMNSATTPSAVPSNDPFVQKRQ 59
           MK RHILIS+LFMALAG AMAQ+ AP        AP     S+T  +  PSNDPFVQKRQ
Sbjct: 1   MKARHILISSLFMALAGGAMAQSSAPV-------AP-----SSTATNGAPSNDPFVQKRQ 48

Query: 60  ADADAKAEYKAQKKAAKQEYKSDKKAAKAQLKQEKTESTAQRNEALATTPKTKTDTTH 117
           ADADAKA+YKA+KKAAKQEYK D+  AKAQLKQE+ ESTAQRNEALATTP    D +H
Sbjct: 49  ADADAKAQYKAEKKAAKQEYKQDRAQAKAQLKQERQESTAQRNEALATTPAAPVDKSH 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.302    0.112    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 207,645
Number of extensions: 5352
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,269,480
Effective search space: 54587640
Effective search space used: 54587640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 124 (52.4 bits)