BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0057.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309390|ref|YP_003773482.1| glutamine amidotransferase [Her...   376   e-105
gi|300309844|ref|YP_003773936.1| glutamine amidotransferase [Her...   174   7e-45

>gi|300309390|ref|YP_003773482.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/245 (75%), Positives = 211/245 (86%)

Query: 2   KTALALRHVPNEDLGQLAPLLLGNGYQIRYVEVGVDALVDVSPLDADLVIVLGGPVAVYD 61
           KTALALRHV +EDLGQLAPLL  +GYQ+R+ +VGVD+   VSPLDADL+IVLGGP+AVYD
Sbjct: 3   KTALALRHVVSEDLGQLAPLLARSGYQVRHFDVGVDSFDQVSPLDADLLIVLGGPIAVYD 62

Query: 62  SDAYPWLRGEVAWLRARMLEDLPTLGICLGAQLMAAALHARVYPGSCGKEIGWASLQPGQ 121
           ++AYPWLR E+AWLRAR+LEDLPTLG+ LGAQLMAAALHARVYPGSCGKEIGW+ LQ G 
Sbjct: 63  TEAYPWLRAEIAWLRARLLEDLPTLGLGLGAQLMAAALHARVYPGSCGKEIGWSRLQAGP 122

Query: 122 HLADSPWLREVVEQQTPVLHWHGDTFDLPAGARHLAASARYPHQAFAWGRHCLALQFHPE 181
           HL +  WLR++V+Q+T VLHWHGDTFDLP GARHLA+S  YPHQAFAWGRHCLALQFHPE
Sbjct: 123 HLDEHAWLRQLVDQETRVLHWHGDTFDLPRGARHLASSDMYPHQAFAWGRHCLALQFHPE 182

Query: 182 VDVRTVEHWLVSHAHEIAHTRDISVARLRADAQRHGPQFEAAMLRFWQGWLDSLPGQQHY 241
           VDVRTVE W++ HAHEIAHTR+IS+ARLRADAQ++G +FE A  RFWQGWL SL G    
Sbjct: 183 VDVRTVEQWMLGHAHEIAHTRNISLARLRADAQQYGRRFEEAARRFWQGWLHSLDGLDGS 242

Query: 242 ITQRR 246
              RR
Sbjct: 243 EEHRR 247


>gi|300309844|ref|YP_003773936.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score =  174 bits (440), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/243 (43%), Positives = 137/243 (56%), Gaps = 5/243 (2%)

Query: 1   MKTALALRHVPNEDLGQLAPLLLGNGYQIRYVEVGVDALVDVSPLDADLVIVLGGPVAVY 60
           MK A+ALRHV  ED+G L  LL  +GY++RY++  ++     +   ADL+IVLGGP+  Y
Sbjct: 1   MKEAIALRHVHFEDVGILDSLLASHGYRLRYIDATIEQADTAAAEQADLLIVLGGPIGAY 60

Query: 61  DSDAYPWLRGEVAWLRARMLEDLPTLGICLGAQLMAAALHARVYPGSCGKEIGWASLQPG 120
           D   +P+L  E+  +  R+ +  P LGICLGAQL+A AL A V P    KEIG+A L   
Sbjct: 61  DEGLHPFLLRELDLIARRLQQQRPLLGICLGAQLIARALGAEVAPMGL-KEIGYAPLDLS 119

Query: 121 QHLADSPWLREVVEQQTPVLHWHGDTFDLPAGARHLAASARYPHQAFAWGRHCLALQFHP 180
                SP     +E Q PVLHWHGD F +P GA  LA++   PHQAF+ G H LALQFH 
Sbjct: 120 TEGRLSPL--AALEGQ-PVLHWHGDQFAIPPGATCLASTPVCPHQAFSLGAHVLALQFHL 176

Query: 181 EVDVRTVEHWLVSHAHEIAHTRDISVARLRADAQRHGPQFEAAMLRFWQGWLDSLPGQQH 240
           E D   +  WLV HA E+     I    LR  A+R G    +A       WLD L   Q 
Sbjct: 177 EADPARINQWLVGHACELGQA-GIDPRSLREQAKRFGTDLRSAAHAVMSNWLDKLEASQS 235

Query: 241 YIT 243
            ++
Sbjct: 236 ALS 238


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 938,734
Number of extensions: 42702
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)