BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0053.p
         (710 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309387|ref|YP_003773479.1| membrane protein [Herbaspirillu...  1036   0.0  

>gi|300309387|ref|YP_003773479.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 711

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/712 (83%), Positives = 626/712 (87%), Gaps = 8/712 (1%)

Query: 1   MPPLLSSRFS----LYRFLLLNYCRRCRTRVERWRMQFPLRHANLSEGLRAACGAAAMLL 56
           MPPLL+ RFS    LYR LLL++CRRCRTRVERWR QFPLRHANLSEGLRAAC AAAMLL
Sbjct: 1   MPPLLTPRFSQYFSLYRLLLLSHCRRCRTRVERWRAQFPLRHANLSEGLRAACSAAAMLL 60

Query: 57  LGEWLGNPLFSWAAIGAFLTCLADSAGSNRARLASMGGFALASTLGGMVAATAAGFSVEA 116
           LGEWLGNPLFSWAAIGAFLTCLADSAGSNRARLASMGGFALASTLGGMVAA+AA  SVE 
Sbjct: 61  LGEWLGNPLFSWAAIGAFLTCLADSAGSNRARLASMGGFALASTLGGMVAASAASLSVEL 120

Query: 117 GLLTIMACAGVAGFSRIYGAAAGLVLMLAAGVSAIMADAPVVLWPLAQSHVLIYFGGCLW 176
           G LTIMACAGVAGFSRIYGAAAGLVLMLAAGVSAIMADAPV+LWPL+QSHVLIYFGGCLW
Sbjct: 121 GWLTIMACAGVAGFSRIYGAAAGLVLMLAAGVSAIMADAPVILWPLSQSHVLIYFGGCLW 180

Query: 177 ALLLGLTAWRIHPFAPARQAVARAYGTLAELAAIAAANDLDDVAYAVHAAELAAHTRRHA 236
           ALLLGLT WRIHPF PARQAVARAYGTLAELA+IAAAN LDD AYA+HAA+LAAH RRHA
Sbjct: 181 ALLLGLTVWRIHPFGPARQAVARAYGTLAELASIAAANGLDDPAYAMHAADLAAHARRHA 240

Query: 237 RFDIASAHRALEAVAVERTESRRLYENLLVRLARAEVLLDGITVLADLQLTHYQPAHARQ 296
           RFDIA+A RAL+AVAVERTESRRLY+NLLVRLARA+ LLDG+T+L DLQLTHYQ   ARQ
Sbjct: 241 RFDIAAARRALQAVAVERTESRRLYDNLLVRLARADDLLDGVTLLVDLQLTHYQEPRARQ 300

Query: 297 RTARVLGAIARQLQAMQRDMQGGQAIAADDDARIMLRLRQLVARLPSGTGRLLQQVDTPL 356
           RT RVL  IARQLQAMQ  M  G+AIAAD+DARIM RLRQLVARLPSGTGRLLQQV TPL
Sbjct: 301 RTTRVLAGIARQLQAMQAAMSQGEAIAADEDARIMARLRQLVARLPSGTGRLLQQVHTPL 360

Query: 357 ALGGQDPAGLKQAARVARPQRRGVAALLHLLAALWRKAALHVRAGSAEWHHAWRCAAAAG 416
           A+G  DPAGLK  AR A P     A LLH + A WRKAA H   GSAEWHHAWRCAAAAG
Sbjct: 361 AVGSDDPAGLKLMARSAAPAPALPAILLHRVRAWWRKAASHAATGSAEWHHAWRCAAAAG 420

Query: 417 ATYLIVHLLELPFGYWATMATMLVMQPSISDSWSRSMERAVGSVVGGVLAVAVCLVVHSP 476
           ATYLIVHLLELPFGYWATMATMLVMQPSI++SWSRSMERAVGSVVGGVLAV +CLVVHSP
Sbjct: 421 ATYLIVHLLELPFGYWATMATMLVMQPSIAESWSRSMERAVGSVVGGVLAVVLCLVVHSP 480

Query: 477 LGLAVLVFPLTVLTMALRPVSYGLYATFLTPVFVLVADVGGDPAHELTNAALRAGNNVIG 536
           L LA+LVFPLTVLTMAL+PVSYGLYATFLTPVFVLVADVGGDPAHEL NAALRAGNNVIG
Sbjct: 481 LALALLVFPLTVLTMALKPVSYGLYATFLTPVFVLVADVGGDPAHELANAALRAGNNVIG 540

Query: 537 ALVAVLASYLFWPRRQQDDPQTQLRRMAQLNLAYLNAALSAAPALQDKPRMAQLHAHRRD 596
           A+VAVLASYLFWPRR  +DPQ QL+RMAQLNLAYL  AL A PA    P MA LHAHRR 
Sbjct: 541 AVVAVLASYLFWPRRHPEDPQAQLQRMAQLNLAYLIEAL-ATPA---APPMATLHAHRRA 596

Query: 597 ACVANVEAGLLLQRLARERGWPERDHGRGRTAVALSRRLAAAASHLWAHPQAVAPELLDW 656
           ACVANVEAGLLLQR+ARERGWPERDHGRGRTAVALSRRLAAAASH+WAHPQA +PELL W
Sbjct: 597 ACVANVEAGLLLQRVARERGWPERDHGRGRTAVALSRRLAAAASHIWAHPQAASPELLGW 656

Query: 657 LQALAQALQSQDGPALQQLTRQRPAPVQLALAAAVETACLLVGTLEAAQSPP 708
           L+ALA AL +    AL  L R RPAP+ LA AAAVETACLLV TL+A  + P
Sbjct: 657 LRALAAALSAHQSRALHDLLRHRPAPMHLAQAAAVETACLLVATLDADTAMP 708


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,577,060
Number of extensions: 50549
Number of successful extensions: 395
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 618
Effective length of database: 1,184,250
Effective search space: 731866500
Effective search space used: 731866500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)