BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0051.p
         (500 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309385|ref|YP_003773477.1| acyl-CoA transferase [Herbaspir...   969   0.0  

>gi|300309385|ref|YP_003773477.1| acyl-CoA transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 500

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/500 (94%), Positives = 487/500 (97%)

Query: 1   MDSQRIRQPALAGKVMSAAQAATFFHNGMTIGLSGFTRAGDAKAMPRALADRATQEELHF 60
           MDSQRIRQPALAGKVMSAA+AATFFHNGMTIGLSGFTRAGDAKAMPRALADRA QEELHF
Sbjct: 1   MDSQRIRQPALAGKVMSAAEAATFFHNGMTIGLSGFTRAGDAKAMPRALADRAAQEELHF 60

Query: 61  TVITGASLGNGSDGLMAEAGLLARRLPFQVDPTLRKQINAGQVMFIDQHLSETAEQLRSG 120
           TVITGASLGNGSDGLMAEAGLLARRLPFQVDPTLR++INAG+VMFIDQHLSETAEQLRSG
Sbjct: 61  TVITGASLGNGSDGLMAEAGLLARRLPFQVDPTLRRKINAGEVMFIDQHLSETAEQLRSG 120

Query: 121 TPSRIDIAVIEAAAITEEGIVPTMSVGNSASFVEQAKQIVIELNTSMPMALEGLHDIYLP 180
           TPSRIDIAVIEAAAITEEGIVPTMSVGNSASFVEQA+QIVIELNTS+P+ALEGLHDIYLP
Sbjct: 121 TPSRIDIAVIEAAAITEEGIVPTMSVGNSASFVEQARQIVIELNTSVPLALEGLHDIYLP 180

Query: 181 AARPERKPIPLTAAGDRIGHPTIPFDPAKVVAIVLTETPDSPSTVLPPDDETRAIARHVI 240
           AARP R+PIPLT A  RIG  TIPFDPAKVVAIVLT+TPDSPS+VLPPDDETRAIA HVI
Sbjct: 181 AARPAREPIPLTVADQRIGSTTIPFDPAKVVAIVLTQTPDSPSSVLPPDDETRAIAGHVI 240

Query: 241 HFLECEVEAGRLPHTLAPLQAGIGTIANAVLHGLVDSPFRNLVMYSEVLQDSAIELLDSG 300
           HFLECEVEAGRLPHTLAPLQAGIGTIANAVLHGLV+SPFRNLVMYSEVLQDSAI+LLDSG
Sbjct: 241 HFLECEVEAGRLPHTLAPLQAGIGTIANAVLHGLVESPFRNLVMYSEVLQDSAIDLLDSG 300

Query: 301 QLAFASASSITLSQAKYEHFLANLDRYRDKLVLRPQEISNHPEVVRRLGIIGLNTALEFD 360
           QLAFASASSITLSQ KY HFLAN+DRYRDK+VLRPQEISNHPE+VRRLGIIGLNTALEFD
Sbjct: 301 QLAFASASSITLSQDKYAHFLANIDRYRDKVVLRPQEISNHPELVRRLGIIGLNTALEFD 360

Query: 361 LYGNVNSTHVGGTHMMNGIGGSGDFARNGQISIFVSKSVAKDGAISSVVPMVSHVDHSEH 420
           LYGNVNSTHVGGTHMMNGIGGSGDFARNGQISIFVSKSVAKDGAISSVVPMVSHVDHSEH
Sbjct: 361 LYGNVNSTHVGGTHMMNGIGGSGDFARNGQISIFVSKSVAKDGAISSVVPMVSHVDHSEH 420

Query: 421 DVDVLVTEWGLADLRGLAPRERALKVIEQCCHPDYRPQLRDYFERACQAGGHTPHLLGEA 480
           DVDVLVTEWGLADLRGLAPRERA+KVIEQCCHPDYR QLRDYFERACQAGGHTPHLLGEA
Sbjct: 421 DVDVLVTEWGLADLRGLAPRERAVKVIEQCCHPDYRAQLRDYFERACQAGGHTPHLLGEA 480

Query: 481 FSWHQHYAQHRTMRLDQHKG 500
           FSWHQHYA+HRTMRLDQ  G
Sbjct: 481 FSWHQHYARHRTMRLDQRAG 500


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,574,190
Number of extensions: 67890
Number of successful extensions: 232
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,198,455
Effective search space: 492565005
Effective search space used: 492565005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)