BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0048.p (578 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 871 0.0 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 461 e-131 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 383 e-107 gi|300312818|ref|YP_003776910.1| methyl-accepting chemotaxis pro... 346 4e-96 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 344 1e-95 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/586 (79%), Positives = 503/586 (85%), Gaps = 12/586 (2%) Query: 1 MFGSLTVGRKLGLAFLCMVLVSLAGSALSLFNFNKLEAASAMNVHTYEVMGTADNMLVNM 60 M GS+TVGRKLGLAFLC+V+V+L GS+LSL NFN+LE ASAMN+HTY+VMG AD+ML+NM Sbjct: 1 MSGSMTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEDASAMNIHTYQVMGKADDMLLNM 60 Query: 61 VNIETGIRGYVASGNEAFLAPYLEGRKEFRKAFDEAKKLTSDNPAQQKRLAAMLELTNKI 120 VNIETGIRGYVASGNEAFL PY GRK+F+ AFD+AK LT+DNP QQKRLA M EL+NKI Sbjct: 61 VNIETGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNKI 120 Query: 121 EEVDQTLIKLRKEANASASTQALQAYFGAAHDKVHMDRFRALQAEFNQAEESLLKVRGEQ 180 EE+DQ LIKLRKEANAS S QALQ YFGA HDK+ MDRFR +Q EF AEESLLK RGE Sbjct: 121 EEIDQNLIKLRKEANASGSQQALQTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGEL 180 Query: 181 VRALSSSTLSVLIGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAAGDLTVP 240 VR+LS STL V+I AGALTVLLAI AG ITRSI+NALGGEP AAA VAQ IAAGDLTV Sbjct: 181 VRSLSKSTLIVMIAAGALTVLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLTVA 240 Query: 241 VPLKNNDRDSLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAAS 300 VPLK ND SLMASL +MREQLTTIVRGIQ+SGESISVAA EIATGNTDLSQRTE+QAAS Sbjct: 241 VPLKPNDSHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAAS 300 Query: 301 LEETASSMEELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNRV 360 LEETASSMEELTSTVRQNSDNARQ N LAENASTLA KGGEVV RVIDTMNEISDSS++V Sbjct: 301 LEETASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKV 360 Query: 361 SDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLI 420 SDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLI Sbjct: 361 SDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLI 420 Query: 421 NLSGERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQMD 480 LSGERV+RGTHLV EAGQTINEVVQAVRNVTDIM EI+AAS EQTTGIEQVNQAL QMD Sbjct: 421 TLSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMD 480 Query: 481 QVTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGIA-HPVPVA-RAAAVVKTAPK 538 QVTQQNAALVEQAAAAAQAMSEQATELRSAVG+FKT GG A P PV+ R A VV APK Sbjct: 481 QVTQQNAALVEQAAAAAQAMSEQATELRSAVGVFKTGGGTAVQPRPVSPRPAKVVNPAPK 540 Query: 539 PAPAAARSLPPK------VQPSVNKPAPAPSSSFKKEEADGDWETF 578 A R+LPPK +V K A +P K +A G+WETF Sbjct: 541 VGAAKTRALPPKAAATAHTANAVKKEASSP----KAADASGEWETF 582 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 461 bits (1187), Expect = e-131, Method: Compositional matrix adjust. Identities = 285/593 (48%), Positives = 389/593 (65%), Gaps = 26/593 (4%) Query: 2 FGSLTVGRKLGLAF-----LCMVLVSLAGSALSLFNFNKLEAASAMNVHTYEVMGTADNM 56 L +G +L + F + ++LVS+A + NF +L AA+ +NVHTYEV M Sbjct: 3 LADLKIGTRLYMGFGLVAAILVILVSVAYT-----NFARLGAANELNVHTYEVRAQLRAM 57 Query: 57 LVNMVNIETGIRGYVASGNEAFLAPYLEGRKEFRKAFDEAKKLTSDNPAQQKRLAAMLEL 116 +++NIETG RG+ SG +A L PY G F+ A ++ + LTSDN QQ+RL + + Sbjct: 58 AESLINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDS 117 Query: 117 TNK-IEEVDQTLIKLRKEAN-ASASTQALQAYFGAAHDKVHMDRFRALQAEFNQAEESLL 174 + ++ I+LR+ A+ A+ A K MD R L + ++ E +LL Sbjct: 118 EQRWLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALL 177 Query: 175 KVRGEQVRALSSSTLSVLIGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAA 234 R E+ AL S T + LIG GA+ ++LA++ + + +I L A A Q+A+ +A+ Sbjct: 178 GERAEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPL----ALAVQLARRVAS 233 Query: 235 GDLTVPVPLKNNDRD-SLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQR 293 GDLT + +++ D +L+ +L M E L IV G++ E I+ A+ EIATGN DLS R Sbjct: 234 GDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSR 293 Query: 294 TEQQAASLEETASSMEELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEI 353 TEQQA+SLEETASSMEELTSTV+QN+ NAR+ N +A+ AS +A GG VV RV+DTM EI Sbjct: 294 TEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEI 353 Query: 354 SDSSNRVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 413 +DSS ++ DII+VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA Sbjct: 354 NDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 413 Query: 414 KDVKDLINLSGERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVN 473 K++K LI+ S +V+ G+ LV+EAG T+ E+V++V+ VT+++ EISAA EQ +GIEQV+ Sbjct: 414 KEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVS 473 Query: 474 QALGQMDQVTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGIA---HPVPVARAA 530 QA+GQMDQVTQQNAALVEQAAAA+Q++ EQA EL AV +F+ G A P P + Sbjct: 474 QAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASV 533 Query: 531 AVVKTAPKPAPAAARSLP----PKVQPSVNKPAPAPSSSFKKEEADGD-WETF 578 A ++ +PA ++R LP P PS + PAP+S + AD D W TF Sbjct: 534 AASRSGVRPATRSSR-LPSPVGPSASPSASPMHPAPASGSRLSSADADEWVTF 585 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/344 (59%), Positives = 268/344 (77%), Gaps = 8/344 (2%) Query: 182 RALSSSTLSVLIGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAAGDLTVPV 241 R++ ++T +++ G +VLLA+ A F I RS+++ LGGEPA A ++A IA G+L V + Sbjct: 187 RSILTTTWTLVAG----SVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVSI 242 Query: 242 PLKNNDRDSLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAASL 301 PL D+ SLMASL MR QLT IV GI+ S ESIS AA +IA GN DLS+RTE+QAASL Sbjct: 243 PLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAASL 302 Query: 302 EETASSMEELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNRVS 361 EETASSMEE+TSTV QN+ NA QG+ LA +AS A KGGEVV RV+ TM +IS S+ +++ Sbjct: 303 EETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKIT 362 Query: 362 DIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLIN 421 +II +EGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA++AK+++ LI Sbjct: 363 EIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLIE 422 Query: 422 LSGERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQMDQ 481 S + V+ G LV EAG T++EVV++++ V D+M+EI+AAS EQ++GI Q+N A+ QMD+ Sbjct: 423 SSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMDE 482 Query: 482 VTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGIAHPVP 525 VTQQNAALVE++A+AAQ+M++QA LR AV +F+ I P P Sbjct: 483 VTQQNAALVEESASAAQSMAQQANSLRDAVAVFR----IEQPQP 522 >gi|300312818|ref|YP_003776910.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 524 Score = 346 bits (887), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 222/506 (43%), Positives = 323/506 (63%), Gaps = 8/506 (1%) Query: 11 LGLAFLCMVLVSLAGSALSLFNFNKLEAASAMNVHTYEVMGTADNMLVNMVNIETGIRGY 70 +G+A +C+ +S A+S N + + + ++ N + + +R Sbjct: 9 VGMALVCLSFISALCVAMSSM-LNIRDRFDVFLMRDQATLNAVTSLYTNGLQMGQALRNI 67 Query: 71 VAS-GNEAFLAPYLEGRKEFRKAFDEAKKLTSDNPAQQKRLAAMLELTNKIEEVDQTLIK 129 V N+A + RK F A + +LT D+ A +++ + L+ + ++ + +++ Sbjct: 68 VLDPKNQAAYKNLDDSRKGFSDALAASAELTRDDIAYFQKIEEIAGLSQQQLQLQKKIVE 127 Query: 130 LRKEANASASTQALQAYFGAAHDKVHMDRFRALQAEFNQAEESLLKVRGEQVRALSSSTL 189 L AS +A++A + R R + + + + E++ A S L Sbjct: 128 LA----ASDPDKAIKAL--TTEETPVWRRIREQVLALIKTKNADVGKSKEEMDAFSKRML 181 Query: 190 SVLIGAGALTVLLAIVAGFAITRSIVNALGGEPAAAAQVAQHIAAGDLTVPVPLKNNDRD 249 + I GA+ L +V G+ + R+++ LGGEPA A V+Q I+ GD + V + NNDR Sbjct: 182 MLSIALGAVAALTGLVIGYWLIRNVMILLGGEPAYAVAVSQRISGGDFSYDVDVTNNDRS 241 Query: 250 SLMASLATMREQLTTIVRGIQSSGESISVAAGEIATGNTDLSQRTEQQAASLEETASSME 309 SL+ S+ M+E+L ++ GI+SS IS+A EIA GN DLS RTE+QA+SLEETAS+ME Sbjct: 242 SLLFSMRAMQERLIDMISGIRSSANRISIATNEIAKGNMDLSSRTEEQASSLEETASAME 301 Query: 310 ELTSTVRQNSDNARQGNVLAENASTLAVKGGEVVGRVIDTMNEISDSSNRVSDIITVIEG 369 ELTS VRQN+ NA Q NVLA +A+ +AV+GG++V V++TMN+I S+ +V DII+VI+G Sbjct: 302 ELTSVVRQNAGNADQANVLALSATQVAVEGGKLVKDVVETMNQIETSAKKVVDIISVIDG 361 Query: 370 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLINLSGERVQR 429 IAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAK++K LI+ S + V++ Sbjct: 362 IAFQTNILALNAAVEAARAGEGGRGFAVVASEVRNLAQRSAVAAKEIKQLIDNSVDTVEK 421 Query: 430 GTHLVSEAGQTINEVVQAVRNVTDIMTEISAASLEQTTGIEQVNQALGQMDQVTQQNAAL 489 G LV +AG+T++ VV + V+ I+ EISA+S EQT GIEQVNQA+ Q+D VTQQNAAL Sbjct: 422 GNKLVQQAGETMDNVVSGIERVSSIVGEISASSHEQTKGIEQVNQAIIQIDDVTQQNAAL 481 Query: 490 VEQAAAAAQAMSEQATELRSAVGIFK 515 VE+AAAAAQ++ +A +L S V IF+ Sbjct: 482 VEEAAAAAQSLRHEAQQLTSMVRIFQ 507 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 344 bits (882), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 205/370 (55%), Positives = 273/370 (73%), Gaps = 6/370 (1%) Query: 159 FRALQAEFNQAEESLLKVRGEQVRALSSSTLSVLIGAGALTVLLAIVAGFAITRSIVNAL 218 + AL F ++++ L+ G + A + + V + VL AI+ G+ + RSIV L Sbjct: 162 YLALARAFADSQDAQLQAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPL 221 Query: 219 GGEPAAAAQVAQHIAAGDLTVPV-PLKNNDRDSLMASLATMREQLTTIVRGIQSSGESIS 277 A +VA+++AAGDLT + P ++ LM +L M + L IV G++ ESI+ Sbjct: 222 ----TEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESIT 277 Query: 278 VAAGEIATGNTDLSQRTEQQAASLEETASSMEELTSTVRQNSDNARQGNVLAENASTLAV 337 A+GEIA+GN DLS RTEQQA SLEETAS+MEE+TSTVRQN+DNARQ N +A +AS +A+ Sbjct: 278 TASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIAL 337 Query: 338 KGGEVVGRVIDTMNEISDSSNRVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAV 397 +GG++VGRV+ TM+EI+ SS ++ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 338 QGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 397 Query: 398 VASEVRSLAQRSAAAAKDVKDLINLSGERVQRGTHLVSEAGQTINEVVQAVRNVTDIMTE 457 VA+EVRSLAQRSAAAAK++K LI S +V+ G+ LV++AG T+ +VV +VR+VTDI+ E Sbjct: 398 VATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAE 457 Query: 458 ISAASLEQTTGIEQVNQALGQMDQVTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTA 517 ISAAS EQ++GIE++N+A+ QMD+ TQQNAALVEQAAAAA++M EQA L ++ IFK Sbjct: 458 ISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLE 517 Query: 518 GGIAHPVPVA 527 G A +P A Sbjct: 518 QG-AASIPAA 526 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,244,939 Number of extensions: 39292 Number of successful extensions: 637 Number of sequences better than 1.0e-08: 72 Number of HSP's gapped: 316 Number of HSP's successfully gapped: 73 Length of query: 578 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 488 Effective length of database: 1,193,720 Effective search space: 582535360 Effective search space used: 582535360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)