BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0047.p (324 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309384|ref|YP_003773476.1| transcription regulator protein... 528 e-151 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 170 1e-43 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 154 7e-39 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 144 9e-36 gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 140 2e-34 >gi|300309384|ref|YP_003773476.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 528 bits (1361), Expect = e-151, Method: Compositional matrix adjust. Identities = 269/302 (89%), Positives = 285/302 (94%) Query: 23 IQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 82 +QTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY Sbjct: 1 MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 60 Query: 83 ERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRITVEWL 142 ERAKELLAGWD+FENELRGARQHAEG+LRV VPHAFGQ+QLIGPLAQFMR HPRITVEWL Sbjct: 61 ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL 120 Query: 143 LHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRPSDLAT 202 LHDRAADFISQGIDCAIQVGEVND SVVAIHLAEVPRMTVVAP++L GRP+PR P+DLA Sbjct: 121 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAE 180 Query: 203 FPWIAIPAFYRRDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVAVGSSWVLA 262 PWIAIPAFYRR++TLTHA TGEQRQV+FRPQLVTDSLYALRN A+ G+GVAVGSSWVL Sbjct: 181 LPWIAIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLN 240 Query: 263 EDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFIDTMKEAMPAVVHKAVGKGAL 322 EDVA GRLVQLLP+W+PAPLPV LLYPYARF PARLRHFIDTMKEAMPAVVH+AVG GA Sbjct: 241 EDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAVVHQAVGWGAS 300 Query: 323 SS 324 S Sbjct: 301 PS 302 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 170 bits (431), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 100/311 (32%), Positives = 158/311 (50%), Gaps = 6/311 (1%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 77 DR + +Q F +V+A S + AA L + T++ +Q LE L VRLL R+T + +T D Sbjct: 2 DRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPD 61 Query: 78 GERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRI 137 G YER +LA DE E R + +G LR+ VP + G+ L+ L F +P I Sbjct: 62 GAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDI 121 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRP 197 + + DR D + + +DC I++GE+ DSS+VA + +T APA L+ +P Sbjct: 122 ELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTI 181 Query: 198 SDLATFPWIAIPAFYR---RDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVA 254 DL A+ F R I G R+V +L + A CA++G G+ Sbjct: 182 EDLQQHK--AVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMV 239 Query: 255 VGSSWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFIDTMKEAMPAV-V 313 +++ + GRLV++L +W+PAP+P+S++Y + R ++R F+D + E + Sbjct: 240 QAPLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPL 299 Query: 314 HKAVGKGALSS 324 HKA G S Sbjct: 300 HKACTMGMEES 310 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 154 bits (390), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 7/294 (2%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 77 D+++ +QTFV +VE+GS AA ++P +SR++ LE+ LG+RLL R+T + +T++ Sbjct: 2 DKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDE 61 Query: 78 GERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRI 137 G + R KELL + E+E+ A G LR+ P FG +QL +F HP I Sbjct: 62 GRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLI 121 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRP 197 T+ L DR D + +G D AI++ + DS +VA LA V + AP L P P Sbjct: 122 TLNITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGTP 181 Query: 198 SDLATFPWIAIPAFYR---RDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVA 254 ++L +P+I+ YR D + H G+ QV R + ++ R AI G G+A Sbjct: 182 AELRDYPFISYS--YRAGGDDWSFRHVH-GDTCQVRVRSTVYVNNGATCRAMAIAGQGIA 238 Query: 255 VGSSWVLAEDVATGRLVQLLPEWEPAP-LPVSLLYPYARFYPARLRHFIDTMKE 307 + +++ + G+LV+L W L V LYP P +++ D + E Sbjct: 239 IQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIE 292 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 144 bits (363), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 5/293 (1%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 77 D+ + I TF + GSLSAAA I RRL LE LGV+LLQR+T + +T + Sbjct: 2 DQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNE 61 Query: 78 GERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRI 137 G E + +LA ++ E+ + A G L ++ P FG+Q + L F+ H + Sbjct: 62 GAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDV 121 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRP 197 T+ L+DR AD I +GID AI++ + DS++V++ LAE R+ V APA L+ P+ P Sbjct: 122 TLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSP 181 Query: 198 SDLATFPWIAIPA-FYRRDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVAVG 256 +L +A+ + +R TL + +V +V + L N A+ G G+A Sbjct: 182 DELMRHNCLAMSSEGSQRGWTLRQSGKVSVYKVG--GNMVCNDGEVLHNWALAGRGLAWR 239 Query: 257 SSWVLAEDVATGRLVQLLPEW-EPAPLPVSLLYPYARFYPARLRHFIDTMKEA 308 S W + + G LV +L ++ PAP + ++ R P R+R F+D ++ A Sbjct: 240 SMWEVGAAIEAGELVTVLDKFAAPAP-SIYAVFAQRRHLPLRIRAFVDFLRHA 291 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 156/300 (52%), Gaps = 27/300 (9%) Query: 19 RIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDG 78 +++ ++ F R+ E S S AA QL ++S +Q LE+ LG RLLQR+T +++T DG Sbjct: 3 QLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTADG 62 Query: 79 ERCYERAKELLAGWDEFENELRG----ARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAH 134 E Y R++ELL DEFE+ LRG Q G LRV + A ++ ++ L F+ H Sbjct: 63 EAFYRRSRELL---DEFES-LRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKH 118 Query: 135 PRITVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLP 194 P++ +E DR D +++G DC ++ G ++DSS+VA + + ++ +P L+ P Sbjct: 119 PQLEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTP 178 Query: 195 RRPSDLATFPWIAIPAFYRRDITLTHASTG-------EQRQVAFRPQLVTDSLYALRNCA 247 + DLA + YR+ L S G + R + + +S Sbjct: 179 QTLEDLAQHRLV----HYRQ--VLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAAC 232 Query: 248 IEGMGVA----VGSSWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFID 303 + G+G+ VG+ D G +V++LP++ PAP+PVSLLY R PARL F+D Sbjct: 233 LAGLGLIQLPLVGAQKRQMLD--GGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMD 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,023,734 Number of extensions: 42828 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 61 Length of query: 324 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 239 Effective length of database: 1,217,395 Effective search space: 290957405 Effective search space used: 290957405 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)