BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0045.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309377|ref|YP_003773469.1| ABC transporter ATPase [Herbasp...   355   2e-99

>gi|300309377|ref|YP_003773469.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  355 bits (911), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 183/212 (86%), Positives = 192/212 (90%)

Query: 1   MTQASQAAALLLVSRLNFSYPGLDLFQDFSARIDAGVTLVRGGDGRGKTTLLNLLGGFMP 60
           MTQAS   ALLLVSRLNFSYPGLDLFQDFSARI  G+TLVRGGDGRGKTTLLNLL G MP
Sbjct: 1   MTQASDRTALLLVSRLNFSYPGLDLFQDFSARITPGLTLVRGGDGRGKTTLLNLLAGLMP 60

Query: 61  ARDGVLELDGLRLDSDGEAYRRRVFFIDPRSEAYDQMTPPQVFAALAERYPRFEHGLLPA 120
            RDGVLELDGLRLDS+ E YRR+VFFIDPRSEAY+QMTPP+VFAALAER+P F+H  LPA
Sbjct: 61  VRDGVLELDGLRLDSEAENYRRQVFFIDPRSEAYEQMTPPEVFAALAERHPHFDHARLPA 120

Query: 121 LIEGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAGATLTLLDDPYASLDRASINFVATTL 180
           L EGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAA ATLTLLDDPYASLDRASINFVA  L
Sbjct: 121 LTEGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFVAAML 180

Query: 181 NAHADDVQQAWVVAMYEGPEAIRLAGMIDLGD 212
           NAHA+D +QAWVVAMYE PEAIRLAG IDLGD
Sbjct: 181 NAHAEDARQAWVVAMYETPEAIRLAGTIDLGD 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,563
Number of extensions: 25636
Number of successful extensions: 299
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 5
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)