BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0040.p (574 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309367|ref|YP_003773459.1| hypothetical protein Hsero_0021... 1039 0.0 gi|300309370|ref|YP_003773462.1| hypothetical protein Hsero_0024... 779 0.0 gi|300313607|ref|YP_003777699.1| hypothetical protein Hsero_4322... 267 2e-72 gi|300309372|ref|YP_003773464.1| hypothetical protein Hsero_0026... 215 7e-57 gi|300309373|ref|YP_003773465.1| hypothetical protein Hsero_0027... 96 1e-20 >gi|300309367|ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspirillum seropedicae SmR1] Length = 576 Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/574 (86%), Positives = 527/574 (91%) Query: 1 MPTAEPTRLVGTAWDEDGNDVAQSVLTGQNMKVRALCLTTPDAVVPILFVPGIMGTRLKV 60 M EPTRLVGT WD+DGNDVAQSVLTGQNMKVRALCLTTPD VVPILFVPGIMGTRLKV Sbjct: 1 MSGFEPTRLVGTTWDDDGNDVAQSVLTGQNMKVRALCLTTPDVVVPILFVPGIMGTRLKV 60 Query: 61 KGRDKGAAWFPPDTTWEELVLALKYLVRTAADRQRLLNPDTTEVDEDGPASPDDTSKILL 120 GRDKG AWFPP++TWE LVLA K+LVRT ADRQRLLNPDTTEVDEDGPASPDDTSK LL Sbjct: 61 TGRDKGPAWFPPESTWESLVLAFKHLVRTPADRQRLLNPDTTEVDEDGPASPDDTSKTLL 120 Query: 121 ALAPGKTDDERIKWRGWGQLHADSYLQILSLLETSMAMIFDPASQGTVLTAHWKELVMDR 180 +LAPG TD ERIKWRGWGQLHADSYL ILS+LETSMAMIFDPASQGT+LT+ WKELVMDR Sbjct: 121 SLAPGNTDAERIKWRGWGQLHADSYLGILSMLETSMAMIFDPASQGTLLTSRWKELVMDR 180 Query: 181 QDAAKLGAQKPFVPLEEEHLRDAAELLYPVHAVGYNWLQSNKLSAKRLADEIERITAYYR 240 QDAAKLGAQKPFVPLEE+HLRDAAELLYPVHAVGYNWLQSNK+S +RLA EIERITAYYR Sbjct: 181 QDAAKLGAQKPFVPLEEDHLRDAAELLYPVHAVGYNWLQSNKVSGQRLAGEIERITAYYR 240 Query: 241 SKGKHCEQVILVTHSMGGLVARACAQLPGMDQRILGVVHGVMPAIGAPATYKRIRAGFEG 300 SKGK CEQVILVTHSMGGLVARACAQLPGM +RILGVVHGVMPAIGAPATYKRIRAGFEG Sbjct: 241 SKGKSCEQVILVTHSMGGLVARACAQLPGMAERILGVVHGVMPAIGAPATYKRIRAGFEG 300 Query: 301 IAQVVLGRNAADCTAVMANAPGPLELLPTAQYKTWTNRGEQHWLRTSYRAIGQSGMPEEL 360 +AQVVLGRNAADCTAVMANAPGPLELLPTAQYKTWTN+GE+HWLRTSYRAIGQ GMPEE+ Sbjct: 301 MAQVVLGRNAADCTAVMANAPGPLELLPTAQYKTWTNQGERHWLRTSYRAIGQRGMPEEM 360 Query: 361 ESFLGEGDPYANIYLNNTPDWWKLVREDLIDPAGKEDRERAEREGTVLVREDQDLPDFYR 420 +SFLGEGDPYA IYLNNT DWWKLVRE+LIDPAGKED+ERA E VL RED DF + Sbjct: 361 DSFLGEGDPYAEIYLNNTLDWWKLVREELIDPAGKEDKERARSENKVLAREDAKSSDFEQ 420 Query: 421 FKKKMDVAQLLHQQIEDSYHSNTYAYYAADPQRPAWNEINWKCTWMVPGDPAKAQLAEDD 480 F K+MD A LHQQIED YH NTYAYYAADPQ+PAWNEINWKC MVPGDPAKAQLAEDD Sbjct: 421 FAKRMDKALTLHQQIEDQYHPNTYAYYAADPQQPAWNEINWKCGPMVPGDPAKAQLAEDD 480 Query: 481 LNGMLELRFDQHHSQYFTLQGGTGPGDGTVPAESGGAPKPHVVQLFKHEGKLKSHDSYDH 540 LNGMLELRF +HH ++FTLQ GTGPGDGTVPAESGGAPKPHVVQLFKHEGK KSHDSYDH Sbjct: 481 LNGMLELRFGEHHRRFFTLQDGTGPGDGTVPAESGGAPKPHVVQLFKHEGKQKSHDSYDH 540 Query: 541 QFSYNAKISQAVTLYSIIRIASASAYLKSPSGEK 574 QFSYNAKI+QAVTLYSIIRI S+S + K+PSG+K Sbjct: 541 QFSYNAKIAQAVTLYSIIRIVSSSTHFKTPSGDK 574 >gi|300309370|ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspirillum seropedicae SmR1] Length = 534 Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/522 (73%), Positives = 435/522 (83%), Gaps = 1/522 (0%) Query: 4 AEPTRLVGTAWDEDGNDVAQSVLTGQNMKVRALCLTTPDAVVPILFVPGIMGTRLKVKGR 63 A P RLV TAWDE GNDV QSVLTG++MKVRALCLTTPD V+PI+FVPGIMGTRLKVKGR Sbjct: 8 AGPMRLVPTAWDEVGNDVMQSVLTGKSMKVRALCLTTPDVVIPIVFVPGIMGTRLKVKGR 67 Query: 64 DKGAAWFPPDTTWEELVLALKYLVRTAADRQRLLNPDTTEVDEDGPASPDDTSKILLALA 123 K AAWFPPD WE LVLAL+++ RTAADRQRLLNP TTEVD+DGPA PDD SK LL A Sbjct: 68 IKDAAWFPPDGGWESLVLALRHIGRTAADRQRLLNPATTEVDDDGPAFPDDISKTLLGFA 127 Query: 124 PGKTDDERIKWRGWGQLHADSYLQILSLLETSMAMIFDPASQGTVLTAHWKELVMDRQDA 183 PGKTD ERIKWRGWGQLHA SYL ILSLLE+SMA+IFDPASQG LT+HW++LVM RQDA Sbjct: 128 PGKTDAERIKWRGWGQLHASSYLSILSLLESSMALIFDPASQGKKLTSHWQDLVMSRQDA 187 Query: 184 AKLGAQKPFVPLEEEHLRDAAELLYPVHAVGYNWLQSNKLSAKRLADEIERITAYYRSKG 243 AKLGAQKPF PL+E L+DAAE LYPVHAVGYNWLQSNK+SA+RLA EIERITAYYRSKG Sbjct: 188 AKLGAQKPFKPLQERQLQDAAEFLYPVHAVGYNWLQSNKVSAQRLASEIERITAYYRSKG 247 Query: 244 KHCEQVILVTHSMGGLVARACAQLPGMDQRILGVVHGVMPAIGAPATYKRIRAGFEGIAQ 303 + CE+VI+VTHSMGGLVARACAQLP M +RILGVVHGVMPAIGAPATYKRIRAGFEGI Q Sbjct: 248 RSCEEVIVVTHSMGGLVARACAQLPEMAERILGVVHGVMPAIGAPATYKRIRAGFEGIGQ 307 Query: 304 VVLGRNAADCTAVMANAPGPLELLPTAQYKTWTNRGEQHWLRTSYRAIGQSGMPEELESF 363 VVLGRN A+CTAVMANAPGPLELLPTAQYKTWTN+GE+HWLR SY IGQ G+PEE+ESF Sbjct: 308 VVLGRNGAECTAVMANAPGPLELLPTAQYKTWTNQGERHWLRVSYLGIGQRGLPEEMESF 367 Query: 364 LGEGDPYANIYLNNTPDWWKLVREDLIDPAGKEDRERAEREGTVLVREDQDLPDFYRFKK 423 LGEGDPYA IYLNNT DWWKL+REDL++PAG+EDRER R L + PDF R+ + Sbjct: 368 LGEGDPYAKIYLNNTADWWKLIREDLVNPAGREDRERNTRTERAL-HGNLRRPDFDRYAQ 426 Query: 424 KMDVAQLLHQQIEDSYHSNTYAYYAADPQRPAWNEINWKCTWMVPGDPAKAQLAEDDLNG 483 + A LH+ I YH TYAYYAADPQRP+WNE+ WKC +P D A+ +D+LNG Sbjct: 427 NLQKASELHKLIHQRYHPRTYAYYAADPQRPSWNEVQWKCPVSLPDDIKTAKHRDDNLNG 486 Query: 484 MLELRFDQHHSQYFTLQGGTGPGDGTVPAESGGAPKPHVVQL 525 + L F + ++ F LQ +GPGDGTVPAESG AP P+V+Q+ Sbjct: 487 EIFLAFKKDIARRFVLQDPSGPGDGTVPAESGAAPTPYVLQI 528 >gi|300313607|ref|YP_003777699.1| hypothetical protein Hsero_4322 [Herbaspirillum seropedicae SmR1] Length = 534 Score = 267 bits (682), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 197/585 (33%), Positives = 283/585 (48%), Gaps = 82/585 (14%) Query: 1 MPTAEPTRLVGTAWDEDGNDVAQSVLTGQNMKVRALCLTTPDAVVPILFVPGIMGTRLKV 60 M + RL+ +D+ GN +S L+ + A+C PD V+P++FVPG+MG+ LK Sbjct: 1 MSKNKSERLLTATFDKKGNPEWKSTLSSPD-DSYAVCHMIPDRVIPVIFVPGVMGSNLKG 59 Query: 61 KGRDKGAAWFPPDTTWEELVLALKYLVRTAADRQRLLNPDTTEVDEDGPASPDDTSKILL 120 G G W + L +L R A R+R L P VD+DG P T++ Sbjct: 60 IGDADGVRW-----RLDSEFSMLMWLTRGPAKRKRYLTPKKMVVDDDG-TRPSGTAQ--- 110 Query: 121 ALAPGKTDDERIKWRGWGQLHADSYLQILSLLETSMAMIFDPASQGTVLTAHWKELVMDR 180 E +K RGWG++ A SY L LE ++ + T ++L++ R Sbjct: 111 -------HGEELKRRGWGEVGAMSYGDFLVWLENAL-------NDFTNTKGGHRDLLIGR 156 Query: 181 QDAAKLGAQKPFVPLEEEHLRDAAELLYPVHAVGYNWLQSNKLSAKRLADEIERITAYYR 240 LG+ K L + + + +PVHA GYNWL SN SAK+L + I + A Y+ Sbjct: 157 T----LGSMKSDEALLKAEVALSYRYRFPVHAFGYNWLDSNDASAKQLRERINSVIARYK 212 Query: 241 SKGKHCEQVILVTHSMGGLVARACAQLPGMDQRILGVVHGVMPAIGAPATYKRIRAGFEG 300 + K CE+VILVTHSMGGLVAR C+++ GM +ILG+VHGVMPAIGA A Y+R ++G EG Sbjct: 213 KEKKRCEKVILVTHSMGGLVARYCSEVLGMSDKILGIVHGVMPAIGAAAVYRRFKSGTEG 272 Query: 301 --IAQVVLGRNAADCTAVMANAPGPLELLPTAQYKTWTNRGEQHWLRTSYRAIGQSGMPE 358 +A VLG +AA+ TAV+++APGPL+LLPT +Y WLR G S Sbjct: 273 GWLATKVLGEDAAEMTAVLSSAPGPLQLLPTPEYG-------NGWLRID----GGS---- 317 Query: 359 ELESFLGEGDPYANIYLNNTPDWWKLVREDLIDPAGKEDRERAEREGTVLVREDQDLPDF 418 + S DPY IY WW + + LI P +RE D D DF Sbjct: 318 TVVSLPRNNDPYYEIYTVRG-RWWSMCEDHLITPRTTMLSASQKRE------IDADWADF 370 Query: 419 YRFKKKMDVAQLLHQQIEDSYHSNTYAYYAADPQRPAWNEINWKCTWMVPGDPAKAQLAE 478 + HQ+I YH NTYA++ +D A+ + W+ T+ P P + + Sbjct: 371 SDVINSK--VKTFHQEITGEYHPNTYAFFGSDRHFKAYGTVQWRTTFQSPRRPPIPRPNK 428 Query: 479 DDLNGMLELRFDQHHS-----------------QYFTLQGGTGPGDGTVPAESGGAPKPH 521 D + L + + + F + GDGTVP SG APK H Sbjct: 429 DVFDAKLNFYGELGETRTALYPHGMSAGQIAPNEVFRISEPDEDGDGTVPHRSGIAPKEH 488 Query: 522 VVQLFKHEGKLKS--HDSYDHQFSY-NAKISQAVTLYSIIRIASA 563 +KS S H+ +Y ++ I++ TL +I++I A Sbjct: 489 P--------GMKSLLRISVGHESAYKDSDIAREFTLRAIVQIVQA 525 >gi|300309372|ref|YP_003773464.1| hypothetical protein Hsero_0026 [Herbaspirillum seropedicae SmR1] Length = 161 Score = 215 bits (548), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 104/134 (77%), Positives = 112/134 (83%) Query: 6 PTRLVGTAWDEDGNDVAQSVLTGQNMKVRALCLTTPDAVVPILFVPGIMGTRLKVKGRDK 65 PTRLV TAWDE GNDVAQSVLTGQ MKVRALCLT+PD V+P++FVP IMGTRLK+KGR K Sbjct: 10 PTRLVPTAWDEQGNDVAQSVLTGQRMKVRALCLTSPDIVIPVVFVPSIMGTRLKLKGRGK 69 Query: 66 GAAWFPPDTTWEELVLALKYLVRTAADRQRLLNPDTTEVDEDGPASPDDTSKILLALAPG 125 G AWFPP+ WE L LALK++ RTAADRQRLLNPD TE DEDG A PDD SK LLA APG Sbjct: 70 GPAWFPPEGKWETLALALKHVGRTAADRQRLLNPDNTEADEDGSAYPDDISKTLLAFAPG 129 Query: 126 KTDDERIKWRGWGQ 139 KTD ERIKW GWG Sbjct: 130 KTDAERIKWWGWGN 143 >gi|300309373|ref|YP_003773465.1| hypothetical protein Hsero_0027 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 43/58 (74%), Positives = 51/58 (87%) Query: 156 MAMIFDPASQGTVLTAHWKELVMDRQDAAKLGAQKPFVPLEEEHLRDAAELLYPVHAV 213 MA+IFDPAS+G LT+HW+ELVM RQDAA+LGAQKPF PL+E+ L+ AAE LYPVHAV Sbjct: 1 MALIFDPASRGRKLTSHWQELVMARQDAARLGAQKPFTPLQEKQLQQAAEALYPVHAV 58 Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 43/50 (86%), Positives = 45/50 (90%) Query: 515 GGAPKPHVVQLFKHEGKLKSHDSYDHQFSYNAKISQAVTLYSIIRIASAS 564 G APKPHVVQLFKHEGK K H+SYDHQFSYNA ISQAVTLYSIIRI S+S Sbjct: 83 GAAPKPHVVQLFKHEGKRKGHESYDHQFSYNAPISQAVTLYSIIRIVSSS 132 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,028,784 Number of extensions: 92245 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 6 Length of query: 574 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 484 Effective length of database: 1,193,720 Effective search space: 577760480 Effective search space used: 577760480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)