BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0039.p (914 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspiri... 1370 0.0 gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspiri... 635 0.0 gi|300309621|ref|YP_003773713.1| VGR-related protein [Herbaspiri... 451 e-127 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 322 6e-89 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 303 6e-83 >gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 913 Score = 1370 bits (3545), Expect = 0.0, Method: Compositional matrix adjust. Identities = 671/914 (73%), Positives = 772/914 (84%), Gaps = 1/914 (0%) Query: 1 MLPMTLTTALAAWTQSARAIRLRLPDSHQHLQETLLVTHVAGSESVCGALDYQLFCISTT 60 ML L+ AL+ WTQ ARAIRLRLP SHQ LQ+ LLV HV G ES+CGA++Y+L C+++ Sbjct: 1 MLYRILSEALSTWTQKARAIRLRLPPSHQALQDALLVMHVTGRESLCGAMEYELLCLTSR 60 Query: 61 FGLELKQFMALPLELQFVTDRGQLRTVCGFVAEATEGQLDEGLARYRLVLRDALALMGQR 120 L L+ F+ALP+E+Q VTD G LRTVCGF+AEA GQLD+ L YRLVLRDAL+LMG R Sbjct: 61 EDLALEDFVALPVEIQLVTDLGLLRTVCGFIAEAHAGQLDDELVSYRLVLRDALSLMGHR 120 Query: 121 INTRVFLHASEQDITQVMLQEWRQRNALLASSFEVDWSLMSELGPAREFTMQHNESDADF 180 INTRVFL ASE D+TQ ++ EWRQR+ L+ASSFEVDWSL++E PAREF MQHNESDADF Sbjct: 121 INTRVFLRASEADVTQALVSEWRQRSPLMASSFEVDWSLLAERFPAREFIMQHNESDADF 180 Query: 181 LRRLWKRRGISWFIRPGEPLAPNQSHSARHTLVLFNEAFELPRNVAQMVRYRRDHAPQEQ 240 LRRLWKRRGISWFIRPGEP P+Q+ S RHTLVLF++A +LPRN A V YR+DHAP E+ Sbjct: 181 LRRLWKRRGISWFIRPGEPPLPHQAGSPRHTLVLFDDAVQLPRNAAGAVSYRQDHAPAEE 240 Query: 241 DRILRWSATRQLRPGSVSRHAWDHVPAAAMRSHVDMRVDQGELGNRFASILDDYLIDAPH 300 D I+RW TR+LR GSVSRHAWDH MRS V+ +QGELG+ FA +LDDY I+APH Sbjct: 241 DGIVRWLGTRRLRAGSVSRHAWDHAQDGPMRSQVNTVAEQGELGDHFARLLDDYFIEAPH 300 Query: 301 IGEDREDYHQLGQLRMQRHAYEAKCFHAESDVRALRVGEWIAVEDHPELERHPAHEREFI 360 I +DRED+HQ+ RMQR A E F A+S +RALRVGEWI V+DHPEL+R AHEREF+ Sbjct: 301 IADDREDFHQIATARMQRLAQETAEFQADSTIRALRVGEWIGVKDHPELDRRAAHEREFV 360 Query: 361 LTRLEVYAENNLPAALDEHLQSSGALAGWPLAPELAALRQRCHAQGRRYLNRFDCVRRGT 420 +TRLEVYAENN PA+LDEH++ L +LA LR+RC AQGRRYLNRF CVRRGT Sbjct: 361 ITRLEVYAENNFPASLDEHVRLVARHHDSSL-EDLAPLRRRCLAQGRRYLNRFTCVRRGT 419 Query: 421 PILPAFDPRRDLPRPRLQNAHVVGPAGEELYCDALGRVKLRFPGTRIEDHAHANGAGAND 480 P++ AFDPR DLP R+QNAHVVGPAGEELYCDALGR+KLRF GTR++DH HA GAGA+ Sbjct: 420 PLVAAFDPRVDLPAVRVQNAHVVGPAGEELYCDALGRIKLRFHGTRMQDHQHAGGAGASG 479 Query: 481 SERDSAWVRVTSYWAGSQWGAISLPRIGDEVIVDFLGGDPDKPIVVGRVYSGLALPPSFS 540 SERDSAWVRV S+WAG QWGAISLPR+GDEV+VDFLGGDPDKPIVVGRVY+G +LPP+FS Sbjct: 480 SERDSAWVRVASHWAGRQWGAISLPRVGDEVLVDFLGGDPDKPIVVGRVYNGQSLPPAFS 539 Query: 541 QIGSLPGNRFLAGIKSKEVQGYRYNQLRLDDTPHQISAQLSSEHGHSELNLGWLTHPRHE 600 ++GSLPGNRFLAGIKSKE+QG RYNQLRLDDTP QISAQL+S+HG SELNLGWLTHPR Sbjct: 540 RVGSLPGNRFLAGIKSKEIQGQRYNQLRLDDTPQQISAQLASQHGQSELNLGWLTHPRAG 599 Query: 601 GHGEARGVGAELRTDEALALRGGRGVLISAAARERASGGQLDRQEMLGLLRVLQDVQQQL 660 G +ARG GAELRTD+ALALRGG+GVLISA R+ ASG QLDR EMLGLL VLQDVQQQL Sbjct: 600 GRSDARGEGAELRTDQALALRGGQGVLISAVMRQEASGTQLDRAEMLGLLHVLQDVQQQL 659 Query: 661 AELAKTHDAGSTEAKTFQALREQLAGWEAGSNTDAQGSGGGKPVVAVTAPAGVAITSEDG 720 A LA+TH A T+ +TF LR+QL WEAGSNT A+ GGGKP+VAVTAPAGVAITS++G Sbjct: 660 ATLAQTHHADDTQLQTFSRLRDQLDAWEAGSNTQAKSDGGGKPMVAVTAPAGVAITSDEG 719 Query: 721 VAIGAQTQVDIISVGNTQLSVGKRLLARVAESISLFAQRLGIKLVAARGKLELTTHADDI 780 VA+GAQ ++D+ISVGNTQ S GK+LLARVAESI LFAQRLGI+LVAA GKL+L TH D+ Sbjct: 720 VALGAQKEIDLISVGNTQFSAGKKLLARVAESICLFAQRLGIQLVAANGKLQLQTHGGDV 779 Query: 781 EASSAKRIVLSAADEIVLQAPKLRLLAEGAQIDLGGGAITQQSSGDHVIRSADFHHLNGA 840 E +SA+RIVL+AADEIVLQAP+LRL A+GAQIDLGGG ITQQSSGDHVIRS +FHH++GA Sbjct: 780 EVTSARRIVLTAADEIVLQAPRLRLQAQGAQIDLGGGVITQQSSGDHVIRSGNFHHVSGA 839 Query: 841 DAQPPGVPMPASQMRTDERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTVLSQ 900 D+QPPGV +PAS MRTDERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRT LSQ Sbjct: 840 DSQPPGVELPASTMRTDERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTALSQ 899 Query: 901 DMALRIARLRIVKE 914 DMA+RIARLRIVKE Sbjct: 900 DMAMRIARLRIVKE 913 >gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 966 Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/825 (43%), Positives = 506/825 (61%), Gaps = 19/825 (2%) Query: 5 TLTTALAA--WTQSARAIRLRLPDSHQHLQETLLVTHVAGSESVCGALDYQLFCISTTFG 62 T+T A A+ +Q+ R IRLR Q +++LL+ V E++ + QL C+ST Sbjct: 7 TITAAFASAILSQNLRPIRLRWGPQEQRFEQSLLLQRVDIQETLLEGMQVQLTCVSTDPD 66 Query: 63 LELKQFMALPLELQFVTDRGQLRTVCGFVAEATEGQLDEGLARYRLVLRDALALMGQRIN 122 L L + PL ++ VTDRG+L G + +A G D L Y+L +RDAL++M R+N Sbjct: 67 LPLHTLLGQPLGVEMVTDRGRLHHTNGLITDACAGHADGALRVYQLTMRDALSIMEGRVN 126 Query: 123 TRVFLHASEQDITQVMLQEWRQRNALLASSFEVDWSLMSEL-GPAREFTMQHNESDADFL 181 TR+F S I +++L EWRQR++ LA++F+ D + + PARE + Q NESDA F+ Sbjct: 127 TRIFRRLSVPSILEILLSEWRQRSSTLAAAFKFDLDGLDDTRYPAREISHQFNESDAHFI 186 Query: 182 RRLWKRRGISWFIRPG----EPLAPNQSHSARHTLVLFNEAFELPRNVAQMVRYRRDHAP 237 RRL +R GI+W++ G E + HTLV ++ LPR A VRY RD A Sbjct: 187 RRLCRREGIAWYVASGQQADETAIATHADIPIHTLVFCDQPALLPRAAAGTVRYHRDGAT 246 Query: 238 QEQDRILRWSATRQLRPGSVSRHAWDHVPAAAMRSHVDMRVDQGELGNRFASILDDYLID 297 +E+D I WS R L PGSV R +WD+ A + VDQG+ G + A+IL D LI+ Sbjct: 247 EERDAISAWSRQRSLVPGSVWRRSWDYKAVRAEEASSHSIVDQGDAGYKLANILRDGLIE 306 Query: 298 APHIGEDREDYHQLGQLRMQRHAYEAKCFHAESDVRALRVGEWIAVEDHPELERHPAHER 357 APH + + D+ +L RM H ++ F A VR L VG W ++ HP++ +R Sbjct: 307 APHAADSQNDHLRLADTRMLAHEARSESFDASGTVRDLAVGHWFLLDGHPDMRGQKPAQR 366 Query: 358 EFILTRLEVYAENNLPAALDEHLQSSGALAGWP-LAPELAALRQRCHAQGRRYLNRFDCV 416 EF++T L+ AENN P L + ++ + W LA A LR Y N+ C Sbjct: 367 EFLVTSLQQQAENNFPTVLQDAIRRLAPASPWKNLAHSAADLR---------YRNQLTCR 417 Query: 417 RRGTPILPAFDPRRDLPRPRLQNAHVVGPAGEELYCDALGRVKLRFPGTRIEDHAHANGA 476 RR P+ P +DPR LP A VVGP+ EE+YCD LGR+K++ G EDHAHA GA Sbjct: 418 RRTAPLAPHYDPRLHLPPVHPITALVVGPSKEEVYCDELGRIKVQLQGLHPEDHAHAQGA 477 Query: 477 GANDSERDSAWVRVTSYWAGSQWGAISLPRIGDEVIVDFLGGDPDKPIVVGRVYSGLALP 536 GA+ E+DSA+VRV+S WAG+ +G ++PR+G EV++DFLGGDPDK V G +++G+ LP Sbjct: 478 GASGHEQDSAFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNGINLP 537 Query: 537 PSFSQIGSLPGNRFLAGIKSKEVQGYRYNQLRLDDTPHQISAQLSSEHGHSELNLGWLTH 596 FS GSLPGNRFL+GIK+KE+ G RYNQLRLDD+P QIS QL+SEH HS+LNLG+LT Sbjct: 538 ARFSHSGSLPGNRFLSGIKTKEIGGARYNQLRLDDSPGQISTQLASEHQHSQLNLGYLTE 597 Query: 597 PRHEGHGEARGVGAELRTDEALALRGGRGVLISAAARERASGGQLDRQEMLGLLRVLQDV 656 PRH G GE RG G E RTD +R +GV+I+A +++R G L+R +L L LQ++ Sbjct: 598 PRHGGRGEDRGEGLEARTDGHGVMRAAKGVMITAQSQDRGRGRMLERAALLETLDNLQEL 657 Query: 657 QQQLAELAKTHDAGSTEAKTFQALREQLAGWEAGSNTDAQGSGGGKPVVAVTAPAGVAIT 716 Q+L+ A H A +T+ + +R QL W+AG + P+VAV APAGV+IT Sbjct: 658 AQRLSHDAARHHAEATDVAQLERIRAQLRAWDAGDVANG-AVRAETPMVAVDAPAGVSIT 716 Query: 717 SEDGVAIGAQTQVDIISVGNTQLSVGKRLLARVAESISLFAQRLGIKLVAARGKLELTTH 776 S+D + +GA +D++S NTQLS G+RLL R E +S FA + +KL++ +G +++ H Sbjct: 717 SQDTMVLGAAQHIDLVSRANTQLSAGRRLLMRAGEMLSAFAAK-HMKLISGKGSIKIQAH 775 Query: 777 ADDIEASSAKRIVLSAADEIVLQAPKLRLLAEGAQIDLGGGAITQ 821 + I+ S+A+RI+L A++EI+LQAPK+ + + GGG+ ++ Sbjct: 776 EEHIDLSAARRILLEASEEIILQAPKISIRSRETTEVAGGGSFSR 820 >gi|300309621|ref|YP_003773713.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 912 Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust. Identities = 310/933 (33%), Positives = 462/933 (49%), Gaps = 46/933 (4%) Query: 1 MLPMTLTTALAA--------WTQSARAIRLRLPDSHQHLQETLLVTHVAGSESVCGALDY 52 ML MT ++ +A T R +RL LP S + L+ V G+E+VCG + Y Sbjct: 1 MLTMTASSMTSASFGAFLNLLTHERRLLRLHLPSSAPSAVQRLVALQVTGTEAVCGNVIY 60 Query: 53 QLFCISTTFGLELKQFMALPLELQFVTDRGQLRTVCGFVAEATEGQLDEGLARYRLVLRD 112 ++ C S+ L++ +P+ G VCG + + G + L D Sbjct: 61 RVQCASSAADLDIHALQGVPIGFSVKEGDGGAALVCGLATSVRQIHSEAGAVLLEIELCD 120 Query: 113 ALALMGQRINTRVFLHASEQDITQVMLQEWRQRNALLASSFEVDWSLMSELGPAREFTMQ 172 AL L+ QR RVF S +I++ +L E R N++LA++ S + + P R F MQ Sbjct: 121 ALRLLEQRKTWRVFCDLSVLEISEQILTEHRHDNSVLAAALRWHVSGLHKAYPKRAFVMQ 180 Query: 173 HNESDADFLRRLWKRRGISWFIR----PGEPLAPNQSHSARHTLVLFNEAFELPRNVAQM 228 ESDADFL+RLW++ GI+W R EP+ H L L + P + A Sbjct: 181 AGESDADFLQRLWRQEGIAWHFRFALEGNEPV---------HHLHLADHPSAYPDHSAVA 231 Query: 229 VRYRRDHAPQEQDRILRWSATRQLRPGSVSRHAWDHVPAAAMRSHVDMRVDQGELGNRFA 288 +R+ + ++ D + W A + V+ A+D+ ++ + G A Sbjct: 232 LRFHQAGVMEQTDTVTHWEAWCEQSIDEVTLTAFDYKANRCTQAQEKALRGKDGAGLALA 291 Query: 289 SILDDYLIDAPHIGEDREDYHQLGQLRMQRHAYEAKCFHAESDVRALRVGEWIAVEDHPE 348 L+DY P + Q+ + R++ H A+ A S VR+LR G + HP Sbjct: 292 RTLEDYEYAPPVLAAGLAHQQQMARRRIEAHELAAQGCRARSVVRSLRAGTVFRISGHPH 351 Query: 349 LERHPAHEREFILTRLEVYAENNLPAALDEHLQSSGALAGWPLAPELAALRQRCHAQGRR 408 L+ E F +T+L +YA N+L LD + + W P AAL + Sbjct: 352 LDTLTEREARFTVTQLTLYARNSL--VLDAEWMAP-LMKEW--LPARAALGDQTALDLPV 406 Query: 409 YLNRFDCVRRGTPILPAFDPRRDLPRPRLQNAHVVGPAGEELYCDALGRVKLRFPGTRIE 468 Y N FDCV+ T I+P +DP D+P+ L +A VVG +E+ D LGR+ +RF TR + Sbjct: 407 YCNGFDCVQSDTAIVPRYDPE-DVPKLGLMSAVVVGDGDKEVDVDELGRIAVRFLFTRPQ 465 Query: 469 DHAHANGAGANDSERDSAWVRVTSYWAGSQWGAISLPRIGDEVIVDFLGGDPDKPIVVGR 528 +H G GA+ + DSA +R+ WA + +G PR+G E+++ FL PDKP+ +G Sbjct: 466 EHP--RGRGASGTTGDSARIRILQPWADAGFGTAFWPRVGSEILIAFLQNHPDKPVALGG 523 Query: 529 VYSGLALPPSFSQIGSLPGNRFLAGIKSKEVQGYRYNQLRLDDTPHQISAQLSSEHGHSE 588 +Y G PP FS+ G LP N L+GI+SKE++ R+N L DD+ QISAQ+ S+H ++ Sbjct: 524 LYDGTHYPPKFSRQGKLPENSALSGIRSKELKANRHNHLLFDDSRGQISAQMFSDHAATQ 583 Query: 589 LNLGWLTHPRHEGHGEARGVGAELRTDEALALRGGRGVLISAAARERASGGQLDRQEMLG 648 LN GWL PR EG RG G EL TD A LR G+LI+A AR ASG QL R+E L Sbjct: 584 LNQGWLGSPRTEGRSAPRGEGFELATDAAGCLRTAHGLLITAFARLNASGNQLAREETLA 643 Query: 649 LLRVLQDVQQQLAELAKTHDAGSTEAKTFQALREQLAGWEAGSNTDAQGSGGGKPVVAVT 708 L++ + + E A H A + + + L QL WE GSNT GG PVVAVT Sbjct: 644 LMQQCVQLFTGIGEYAAQHQAKAGDHAPHERLHRQLQQWENGSNTKPDAGDGGAPVVAVT 703 Query: 709 APAGVAITSEDGVAIGAQTQVDIISVGNTQLSVGKRLLARVAESISLFAQRLGIKLVAAR 768 APAG+ ++ + A D +++ + QL+ G+ L A + ISLFAQ + L+A + Sbjct: 704 APAGLHFSTPETAVTHAGENCDTVALRHIQLASGEHLTANAGKGISLFAQSEDLTLIAHQ 763 Query: 769 GKLELTTHADDIEASSAKRIVLS---------AADEIVLQAPKLRLLAEGAQIDLGGGAI 819 G+L+L + +D + ++AK + L+ AADEI+L A ++G+ + LGGG I Sbjct: 764 GELKLQSQHNDTKVAAAKNLSLTASGGKVQIIAADEILLAA------SDGSYLRLGGGKI 817 Query: 820 TQQSSGDHVIRSADFHHLNGADAQPPGVPMPASQMRTDERFILARRGSGRPHVRQRYRIE 879 SG I +A H A P +P A + +LAR + R+ I+ Sbjct: 818 DMGCSGAATIHAAT-HRWIDAQTTPGELPTFAKD-DVGRKPVLARPTDDQKIAGVRFEID 875 Query: 880 LDDGSVIEGVTDEQGRTVLSQDMALRIARLRIV 912 DG G T++ GR A R+R + Sbjct: 876 SGDGGKTSGQTNDLGRAASLSKNAFEQMRIRFL 908 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 322 bits (826), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 271/897 (30%), Positives = 429/897 (47%), Gaps = 62/897 (6%) Query: 33 ETLLVTHVAGSESVCGALDYQLFCISTTFGLELKQFMALPLELQFVTDRGQLRTVCGFVA 92 + LL + +E + + + ++T G+ L+Q +A P+ L G + G+V Sbjct: 32 DILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPVTLWIRQHDGDTLPLHGYVH 91 Query: 93 EATEGQLDEGLARYRLVLRDALALMGQRINTRVFLHASEQDITQVMLQEWRQRNALLASS 152 A D L +L L L + R + R++ +DI + Q Sbjct: 92 TAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTEDILADVFNNHPQARGHYRFQ 151 Query: 153 FEVDWSLMSELGPAREFTMQHNESDADFLRRLWKRRGISWFIRPGEPLAPNQSHSARHTL 212 E ++ R + Q+ E+D F++RL + G WF + + + H L Sbjct: 152 LERPYT-------PRPYCTQY-ETDWHFVQRLMEEEG--WFAHHEQ-----REDGSGHVL 196 Query: 213 VLFNEAFELPRNVAQMVRYRRDHAPQEQDRILRWSATRQLRPGSVSRHAW----DHVPAA 268 V+ + + LP Q + + E D+IL WSA+R L S W D + Sbjct: 197 VITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRTL-----SSKGWRGRSDDYKSP 251 Query: 269 AMRSHVDMRVDQGELGNRFASILDDYLIDAPHIGEDREDYHQLGQLRMQRHAYEAKCFHA 328 M+ + +V E G + + L+ Y + +E ++ L++++ + + A Sbjct: 252 GMKKEAEEQV-MPEYG-QLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRYSA 309 Query: 329 ESDVRALRVGEWIAVEDHPELERHPAHEREFILTRLEVYAENNLPAALDEHLQSSGALAG 388 S VR L G W +E+HP+ P ER+F++ ++ + ENNLP + + L G+L G Sbjct: 310 VSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLS-HQALDFPGSLKG 368 Query: 389 WPLAPELAALRQRCHAQGRR-----YLNRFDCVRRGTPILPAFDPRRDLPRPRL--QNAH 441 +A + + R+R A+ NRF+ RR P F P R RP + Q A Sbjct: 369 ALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLP----FRPARAHARPVMLPQTAI 424 Query: 442 VVGPAGEELYCDALGRVKLRFPGTRIEDHAHANGAGANDSERDSAWVRVTSYWAGSQWGA 501 VVGPA EE+Y D L R+K++F RI +E S WVRV+ AG WGA Sbjct: 425 VVGPASEEVYTDHLDRIKVQFRWDRINP----------GNEAASCWVRVSYPNAGQYWGA 474 Query: 502 ISLPRIGDEVIVDFLGGDPDKPIVVGRVYSGLALPPSFSQIGSLPGNRFLAGIKSKEVQG 561 I +PRIG EVIV FL GDPD+P+V GR+++ P + N L+G+KSKE G Sbjct: 475 IQVPRIGQEVIVSFLNGDPDRPVVTGRLFNAEQRPQWHT-------NGRLSGVKSKEFGG 527 Query: 562 YRYNQLRLDDTPHQISAQLSSEHGHSELNLGWLTHPRHEGHGEARGVGAELRTDEALALR 621 +NQ+ +DDTP Q L S + H++LNLG L G G L TD A+ Sbjct: 528 TGFNQMVMDDTPEQNRIHLYSTNTHAQLNLGHLVSQTGNERRSFFGSGFALSTDAYGAIV 587 Query: 622 GGRGVLISAAARERASGGQLDRQEMLGLLRVLQDVQQQLAELAKTHDAGSTEAKTFQALR 681 +G+ IS R A G QLD +E G L+ ++ + L+E A AG+ +ALR Sbjct: 588 THKGLYISTYGRPGAQGTQLDAREATGQLKSGANLSRTLSETAA--KAGAEPLAGQEALR 645 Query: 682 EQLAGWEAGSN--TDAQGSGGGKPVVAVTAPAGVAITSEDGVAIGAQTQVDIISVGNTQL 739 + + +A + AQ + + ++ +P G+ +T+ GV A ++ + S +T + Sbjct: 646 DFIDATQADYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSI 705 Query: 740 SVGKRLLARVAESISLFAQRLGIKLVAARGKLELTTHADDIEASSAKRI-VLSAADEIVL 798 +VGK LLA VAE ISLFA + GIKL +A+GK+E+ +DD+E + K +LSA+ + + Sbjct: 706 AVGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEI 765 Query: 799 QAPKLRLL-AEGAQIDLGGGAITQQSSGDHVIRSADFHHLNGADAQPPGVPMPASQMRTD 857 +A + L+ A G+ I L ITQ +SG + A H + G + ++ + D Sbjct: 766 RAKEEVLITAGGSFIRLNASGITQGTSGAWEAK-AGTHAMPGPTTLAYEMNKSSAALPFD 824 Query: 858 ERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTVLSQDMALRIARLRIVKE 914 E F+L P +R+ I DG+ + GVTD QG+T L + + + LRI+ E Sbjct: 825 EEFVLRWPYDQSPVKNRRFEIVRGDGTKVRGVTDAQGKTGLQKSLFVENTSLRILPE 881 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 303 bits (775), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 255/894 (28%), Positives = 408/894 (45%), Gaps = 87/894 (9%) Query: 33 ETLLVTHVAGSESVCGALDYQLFCISTTFGLELKQFMALPLELQFVTDRGQLRTVCGFVA 92 + LL + GSE + DY + +ST +ELK+ +A P+ L D + G+V Sbjct: 44 DVLLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVH 103 Query: 93 EATEGQLDEGLARYRLVLRDALALMGQRINTRVFLHASEQDI-TQVMLQEWRQRNALLAS 151 A D LA +++ + L + R + R++ + DI V Q R Sbjct: 104 TARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDILADVFDQHAYARGNY--- 160 Query: 152 SFEVDWSLMSELGPA--REFTMQHNESDADFLRRLWKRRGISWFIRPGEPLAPNQSHSAR 209 FE+ + PA R + Q+ E+D F++RL + G W+ + + Sbjct: 161 RFEI-------VTPALPRSYCTQY-ETDWHFVQRLMEEEG--WYA-----YHEQKPDGSG 205 Query: 210 HTLVLFNEAFELPRNVAQMVRYRRDHAPQEQDRILRWSATRQLRPGSVSRHAWDH-VPAA 268 H LV+ + + + + + E +RIL WSA+R L ++ D+ P Sbjct: 206 HVLVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGD 265 Query: 269 AMRSHVDMRVDQGELGNRFASILDDYLIDAPHIGEDREDYHQLGQLRMQRHAYEAKCFHA 328 ++ + + G L L+ Y P+ ++D + +LR+++ K F Sbjct: 266 QKQTQERVLPEHGALPGE----LEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMG 321 Query: 329 ESDVRALRVGEWIAVEDHPELERHPAHEREFILTRLEVYAENNLPAALDEHLQSSGALAG 388 S R L G W + DHP + +F+L +E + ENNLP SG Sbjct: 322 VSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPL--------SGTARD 373 Query: 389 WP--LAPELAALRQRC---------HAQGRRYLNRFDCVRRGTPILPAFDPRRDLPRPRL 437 +P L P+L A + +A+ NRF+ RR P FD + + P Sbjct: 374 FPGSLKPQLDAFKASMGRSNDDAGGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMHP-- 431 Query: 438 QNAHVVGPAGEELYCDALGRVKLRFPGTRIEDHAHANGAGANDSERDSAWVRVTSYWAGS 497 Q A VVGP GEE++ D L RVK++F RI E+ S WVRV+ AG Sbjct: 432 QTAVVVGPQGEEVFTDKLNRVKVQFRWDRINP----------GDEKASCWVRVSYPNAGE 481 Query: 498 QWGAISLPRIGDEVIVDFLGGDPDKPIVVGRVYSGLALPPSFSQIGSLPGNRFLAGIKSK 557 WG + +PR+G E+I+ FL GDPD+P+ GR+++ PP + G L +G+KSK Sbjct: 482 NWGEVKVPRVGQELIISFLNGDPDRPVATGRLFN-QEQPPQWHTDGRL------SGLKSK 534 Query: 558 EVQGYRYNQLRLDDTPHQISAQLSSEHGHSELNLGWLTHPRHEGHGEARGVGAELRTDEA 617 E G +NQL +DDT Q L S +++LNLG+L G G L TD+ Sbjct: 535 EFGGNGFNQLVMDDTTSQNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDY 594 Query: 618 LALRGGRGVLISAAARERASGGQLDRQEMLGLLRVLQDVQQQLAELAKTHDAGSTEAKTF 677 A+ +G+ +S+ R G QLD E L++ D+ + L++ A A EA Sbjct: 595 GAVVTQKGLYLSSYGRPGPQGTQLDASEATSLMKASADLARGLSDSASRAGA---EALAQ 651 Query: 678 QALREQLAGWEAGSNTDAQGSGG--GKPVVAVTAPAGVAITSEDGVAIGAQTQVDIISVG 735 +L++ + E + QGS KP++ + APAG+ + ++ G + + + + S Sbjct: 652 DSLKDFVDATEDKYSGQGQGSANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGK 711 Query: 736 NTQLSVGKRLLARVAESISLFAQRLGIKLVAARGKLELTTHADDIE---------ASSAK 786 +T ++ GK LLA V E ISLFAQ G+KL AA+GK+E+ +DD++ S++ Sbjct: 712 DTSIASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSG 771 Query: 787 RIVLSAADEIVLQAPKLRLLAEGAQIDLGGGAITQQSSGDHVIRSADFHHLNGADAQPPG 846 R+ + A DE+++ A G+ I + ITQ + G + A H + G +Q Sbjct: 772 RVEIHAKDEVMIS-------AGGSFIQINSAGITQGTPGKWEAK-ASLHSMPGPASQNFV 823 Query: 847 VP-MPASQMRTDERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTVLS 899 +P + S+++ + G P Y+ L DGSV +G D QG LS Sbjct: 824 MPHVQKSELQPSDMEFRHLTDWGEPLAGAAYKAILSDGSVRKGTLDAQGIARLS 877 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,936,650 Number of extensions: 130241 Number of successful extensions: 471 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 416 Number of HSP's successfully gapped: 11 Length of query: 914 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 820 Effective length of database: 1,174,780 Effective search space: 963319600 Effective search space used: 963319600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)