BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0037.p
         (425 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309364|ref|YP_003773456.1| membrane protein [Herbaspirillu...   636   0.0  

>gi|300309364|ref|YP_003773456.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 425

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/425 (78%), Positives = 369/425 (86%)

Query: 1   MDKHQALRHTKRWALGCLLGSAALFVAASLAPASTGSALLRAMAEAAMVGALADWFAVTA 60
           MDK  ALR TKR A  CLL +AALF+ ASLAP S  S LLRAMAEAAMVGALADWFAV+A
Sbjct: 1   MDKQDALRRTKRLAFICLLAAAALFIIASLAPPSWWSGLLRAMAEAAMVGALADWFAVSA 60

Query: 61  LFRRIPLPLLARHTAIIPRNKERIADNLAVFVEEKFLSPQSLVNLVRRHDPAQRLSAWMA 120
           LFRRIPLPLL+RHT II RNKERIA NLAVFVEEKFLSPQSL  L+RRHDPAQ L+ WMA
Sbjct: 61  LFRRIPLPLLSRHTDIIARNKERIAHNLAVFVEEKFLSPQSLAALIRRHDPAQHLARWMA 120

Query: 121 DPDHAARLGHYMAQAVAGVLTLTDDRRIQAFVREALHTALGKLDLSRSLASILDTLTLDG 180
            P++AARLG YMA+AV GVL LTDDRRIQ+F+R+ LH A+GKLDLS SLA++LDTLTLDG
Sbjct: 121 LPENAARLGGYMARAVGGVLMLTDDRRIQSFLRQGLHAAVGKLDLSHSLAAVLDTLTLDG 180

Query: 181 RHQQLLDRAIVALAELLNREETRDFIAERMVDWLQREYPKIEKLLPSNWIGEKSAATLAD 240
           RHQQLLDRAI+ LA LLNRE+TR FIAERMVDWL++EYPKIEK+LPS WIGEKSA TLAD
Sbjct: 181 RHQQLLDRAIIELAALLNREQTRIFIAERMVDWLRQEYPKIEKILPSQWIGEKSAQTLAD 240

Query: 241 ILDKLLSGIAQDPHHSLRQAFDRQLASFITRLKQDPALRARAEQIKREVLQGEAVNAYVA 300
           ILDKLLSGIA+DP HSLR+AFD Q+A FI RLK+DPALR RA+  KRE+L+GEAV+AYV 
Sbjct: 241 ILDKLLSGIAEDPQHSLRRAFDEQVARFIVRLKEDPALRERADTFKRELLEGEAVHAYVG 300

Query: 301 GLWDSLRDWLRQDLERADSALHAQAAAATQWIGHALQDDVELRASLNKHLEQAVATLSPE 360
           GLWDSLR WLR DLER+DS L   A  ATQWIG ALQDD  LRASLN HLE A+A+LSPE
Sbjct: 301 GLWDSLRQWLRADLERSDSVLRRHAQDATQWIGQALQDDAALRASLNTHLEHAIASLSPE 360

Query: 361 LAQLLTRHISDTIKQWDSAELSRQIELNIGRDLQYIRINGTLVGGLIGAVLFALSWLMQW 420
           LAQLL+RHISDTI+QW++ ELSRQ+ELNIGRDLQ+IRINGTLVG LIGAVLF LS LMQW
Sbjct: 361 LAQLLSRHISDTIRQWETVELSRQVELNIGRDLQFIRINGTLVGALIGAVLFGLSALMQW 420

Query: 421 LVHGV 425
           LVHGV
Sbjct: 421 LVHGV 425


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,224,144
Number of extensions: 45847
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,203,190
Effective search space: 405475030
Effective search space used: 405475030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)