BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0031.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309359|ref|YP_003773451.1| hypothetical protein Hsero_0013...   450   e-128

>gi|300309359|ref|YP_003773451.1| hypothetical protein Hsero_0013
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  450 bits (1158), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/311 (69%), Positives = 252/311 (81%), Gaps = 6/311 (1%)

Query: 1   MSKDKSSARSVLAVLLILAMGLFCTGIARAQSA------ASHGPIIEIKLADLNDDNPLI 54
           M   K+S  SV+A  L++ MGL C   A AQS       A +   IEIKLADLNDDNPLI
Sbjct: 1   MHTFKTSVLSVVASTLVVTMGLVCARPAIAQSTTISPAPAGNESTIEIKLADLNDDNPLI 60

Query: 55  NYRMAVLELAMRASGKPFVIKGCQVANVATSDQRYVQLIQSGQYCNLMATSAGSGMTRSL 114
           NYR AV+ELAMRASGK + + GCQ+   +TSD+R+VQLIQ+GQYCNLMATSAG  +TR L
Sbjct: 61  NYRKAVIELAMRASGKSYTLTGCQITEASTSDRRFVQLIQAGQYCNLMATSAGGELTRGL 120

Query: 115 EAIPFPIYLGGGGYRVLLAHRQSLEHAQAIRSLDDLRRFSIGSGTGWVDTSIMQANQLQV 174
           E IPFPIYLGGGG RVLLAHR+SLE A  +RSL+DLR+F IGSG+GWVDTSIMQAN L V
Sbjct: 121 ETIPFPIYLGGGGIRVLLAHRKSLEAATTLRSLNDLRKFRIGSGSGWVDTSIMQANGLTV 180

Query: 175 VQDSYLNLFAMLKARRFDFYNRSIFEAVGELETYDREQQLAIVPDLVLYYPADLFFYTTP 234
           VQ SY+NLF MLKA+RFDFYNRS+FEAVGELE YD + QLA+VPDL+LYYP+DLFFYTTP
Sbjct: 181 VQSSYMNLFEMLKAQRFDFYNRSVFEAVGELENYDPQHQLAVVPDLILYYPSDLFFYTTP 240

Query: 235 GRDDICAALLDGLKKIHRSGALLELIQQHRSTRNVRQAMQGRHPRVIALDNDRLTPMERQ 294
           GRDDI  ALLDGL+KI R+GAL ELIQ HRSTRN R A++    RV+AL N+RLTP+ER+
Sbjct: 241 GRDDIRDALLDGLRKIQRNGALAELIQNHRSTRNARVALKSGKLRVLALTNERLTPIERE 300

Query: 295 AIETYKLDWFK 305
           A+ETYKLDWF+
Sbjct: 301 ALETYKLDWFR 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 888,512
Number of extensions: 35972
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)