BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0030.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310048|ref|YP_003774140.1| metal-dependent hydrolase [Herb...    97   9e-22

>gi|300310048|ref|YP_003774140.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score = 97.4 bits (241), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 119/239 (49%), Gaps = 12/239 (5%)

Query: 3   KHSVIYGDQQIRFSLRYLQRPTRRVSIHVSPEGAVQVDAPEGTALPEIKQAVRKRAAWIW 62
           K  +  G+  I F+L   +R  R +   VS EG ++V AP+   L EI  A+R++  WI 
Sbjct: 57  KRRIQLGEHTIDFALLRSKR--RTIGFLVSDEG-LRVTAPKWVTLAEIDNAIREKQRWIL 113

Query: 63  QQLQAVTRRRLHVL-PR-EYVSGETHFYLGRRHMLKVLRAEGGESGVRLWRGRLEIRAVR 120
            +L     R    L P+ ++  G T  YLG    L++    G    V L     E+    
Sbjct: 114 SKLNERRERSARRLQPQMQWRDGATLPYLGSDITLRI--RTGQRQAVYLDELTRELNISL 171

Query: 121 PDALTVRKL---LEDWYRQRATDVFAKVLLEMAPRLGLRRTMPPVRLLSMRTQWGSCSPK 177
           P     ++L   ++ W + RA ++F K L+  A +LG++       L S  TQWGSC+  
Sbjct: 172 PADAGEQQLKDRVQGWIQARAEELFGKRLMIYAEKLGVQYRS--YALSSATTQWGSCTSD 229

Query: 178 GEILLNPSLVKAPRPCIEYVVAHELCHLREHNHSDRFYKHLARALPDWEARKAELDELA 236
             I LN  L+    P I+YV+AHEL HLRE NHS RF+  +    P++E+ K  L + A
Sbjct: 230 ARIRLNWRLMHFALPLIDYVIAHELAHLREMNHSPRFWATVQSIFPEFESAKKALRDSA 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 737,721
Number of extensions: 30545
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)