LOCUS AMSB01000039 12016 bp DNA linear BCT 01-OCT-2012 DEFINITION Herbaspirillum seropedicae Os34 C798contig39, whole genome shotgun sequence. ACCESSION AMSB01000039 AMSB01000000 VERSION AMSB01000039.1 GI:407380855 DBLINK BioProject: PRJNA175951 KEYWORDS WGS. SOURCE Herbaspirillum seropedicae Os34 ORGANISM Herbaspirillum seropedicae Os34 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum. REFERENCE 1 (bases 1 to 12016) AUTHORS Ye,W., Ye,S., Liu,J., Chang,S., Chen,M., Zhu,B., Guo,L. and An,Q. TITLE Genome Sequence of the Pathogenic Herbaspirillum seropedicae Strain Os34, Isolated from Rice Roots JOURNAL J. Bacteriol. 194 (24), 6993-6994 (2012) PUBMED 23209241 REFERENCE 2 (bases 1 to 12016) AUTHORS Ye,W., Ye,S., Liu,J., Chang,S., Chen,M., Guo,L. and An,Q. TITLE Direct Submission JOURNAL Submitted (26-SEP-2012) State Key Laboratory of Rice Biology, College of Agriculture and Biotechnology, China National Rice Research Institute, Zhejiang University, 388 Yuhantang Road, Hangzhou, Zhejiang 310058, China COMMENT Bacteria and source DNA available from: Qianli An, Zhejiang University, Hangzhou, Zhejiang 310058, China. ##Genome-Assembly-Data-START## Assembly Method :: CLC Genomic Workbench v. 5.5.1 Genome Coverage :: 600.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..12016 /organism="Herbaspirillum seropedicae Os34" /mol_type="genomic DNA" /strain="Os34" /isolation_source="root" /host="Oryza sativa" /db_xref="taxon:1235827" /country="China: Zhejiang" /collection_date="Jun-2011" ORIGIN 1 cgctatattg gccgccacat tgatccaacc cgtaccgctc cccgatgaat tggtcgtcac 61 cgtcacattg gcgccactat tcagcgctgc ttcaatcgac gcattgttca ccaccgaatc 121 cgtaccactc cccgaccagg tgttactgct attagtcgcg ttactgctac cagtattgat 181 cgtgatattg gtaggatcaa tcagccactg accggccttc cctgcactcg tcgcattcac 241 acgacccagc atcgccagat tctcacccga cgtctccaca aagccgccat ccccctggct 301 acttccaatg ttgacagtcg cattacttcc aacataagtg gaattcgcaa agccaatatt 361 ggccacacta cgggccttgt tcagcgaatc tccaccaatg accacacgac caccaccggc 421 cacgccgcta gcatcaatcg ttgcgttatc gaagaccccg acccggtccc ctcccaacac 481 caccgtacca ccctgttgcc cagcaccctg gcccgacaca tcaatactgc cacgggtgac 541 cgtgtcgcca ccttctccca acaacaccac cgtaccacct gcgctactgc catagccgcg 601 tgctcgaatg atcccgtcgt tgttcaccac cgtactcaac agcgtattct tcccccacgc 661 cgtcaaatac actttgccgc catcggccag aatcaagccc ttgttatcca ccaacgcctg 721 cactgccgac gcgtcaacat tcacactcac cagtgcaccg ttgtctagct gcaagctcac 781 cttatcgccg gccatcagcg ccacatatcc accattggcc tgaatacgac cgctgttact 841 gacctgctga ccagacaaca ccacaaagcc accatcggtc gccttgatat tgccttgatt 901 gaccaccgtc gctccgctct gaccactcag caccacacta ttaccgtcga tactcacatt 961 cgtcgccgtc gacgccaaca atgaacccac gttcacctgt gccgtcgagc caaacacgat 1021 cccgttcggg ttaatcaggt agatctgacc attcgcgttc agattgccgt atatctgcga 1081 tgcctccgta ccaatcaccc ggttcaccgc caccgcactg acgctcggct gtgcgaagtt 1141 caccgtatta cctgcaccaa tactaaagcc cgtccagttc agacccagca cttgcgagcc 1201 ttgctgaatg ctcatggtct ggccatttac attgatgctg cccgtaccgc tgctcaccac 1261 accacccgtc ggcaacggcg ccgccgccca gctaggcaat accgtactca tagaaaacgc 1321 agccatcacg gccatcgtca gccgacgcac cgtcaacgga acgcgcagat caatgcgacc 1381 gccgatcacc atgccgccgc cccctttacg ctgcgagaca gcgttttcgg ccacagccac 1441 taacatgcca tggtgcttgg aaaaaacgag gcggtagatt ttattcatga tgatctttct 1501 tatgtcttga tattgattga gacatcgggt gcagctcccc tactgcggcc ttgctgatac 1561 ccgattcctc ttgttccgcg ccactctcat caacccgaac atctggcagc ttttcgagaa 1621 tggacgcctt ttcccttaaa tatttttaaa ccacatcaac cgctgcacga cacctgacgg 1681 caatcttttt gattgcctta cgacataccc ggccgaaatc agcatccttg ccattgatgc 1741 cgcttacctc ttgagaaaaa actctttacg caatgacgcc gacaagaaga gcctttttca 1801 gatcctcttg tattgctttc agcggtggcc accaatcacc acgatctttc tggcaataca 1861 tccgcaagct ctgataccaa ggattgtcgg gcgcatcatt tccccaaaat gctggactat 1921 ccaaccggga caacatccac actggcttgc ccaatgcgcc ggccaaatgg gctacagccg 1981 tatcgcagga aatcaccaga tccagttgat taatcagcgc tgccgtatcc gcgaaatcag 2041 acagttcatt gctcatatca gcaatatggt gatagtctgg ataagctagt tgcgccactg 2101 ctctccccac ctgtaagctc acgtacagga tctgcggatg ccccaaaaag tcctgatatg 2161 ctgacaacgg caatgagcgt cgctgatcat aagacgcctc cccaccggcc cagacgatgc 2221 cgaccttcaa tgtcgtcgga ccattccgct cttttaatat ccgatcgatc cgctctttcc 2281 actgcgtagc caaatcagca ggaacagcca tatagggttc tgccttgaac ggcacactgt 2341 cggattccac ctccaaggcg gccaacagca acgacatggg acagaagtag tcaacatcat 2401 ctgtctcctc tgtgagaccg atgatctgga tcgtcgaagc agaagatcca agcaagcaca 2461 gactaaacag gcgcttcaaa ttccccggaa ccttgaccaa cacctgcgca gcttgttgcg 2521 caagaagagc aatgaagcgc gcgtataaga tcatgtctcc atgtccccat tcagcctgaa 2581 tgagcaggcg ctttccaata aggctctgcc cctgccagag cttctcctgc ccgcacgtcc 2641 ccaagctgcg tcgggtcaat tcatgcagtg cgggtggcat atattggaaa gaagcacgcc 2701 accgcccacg caacatcatg atctccgcca tgatcttgct ggcttctggc gacttaggaa 2761 cgagcagcaa ggcttgacgg gcatcttcat cagcagcatc gaggttgcga aatgattgat 2821 ataaatgcgc acgtcggcaa agcaaacgaa caagttggtc tacagagggg acatcactct 2881 gtatcttttg tgtgcattgt tcgatcagct gcaatcccat tcctgcgtca agaccaattt 2941 catcgtgatt cccccaatac tcatctgcgt cgggcgccaa tacgaccgcc tgaccaatgc 3001 tctgccaagc agaatcattt ttaccttggg accagtacgc taatgccaac ccctgatagc 3061 cgaccgcagc tctcggctcc agatgggtaa tcagcgcaaa atcttcctca gcaacagcgg 3121 catatccgtg gtgaagcaag agatttgcac gttggaataa ggccggcaga aaatgagggt 3181 gtaattcaat gactcgattc aggcaccaca atgcttcatc gtgacgatac aaagccgaaa 3241 atatctccgc acgcagcgtc tccagttcgg gacactcctg gaaatctgca cgctgctgat 3301 tgaggatttc gatagcgtcc tgatggcgcc cttcacgctg aaacccttgc accaatttaa 3361 acgcggctat ccgccaattt ttaagatagt ccctattgtc tggatcaagc tcacaagcac 3421 gaagaaataa aaatacggcg tcttgtagat acccctcatc gacactatga atcgcacttg 3481 cattcaacgt agcggcattc accgaagtgg ttttcggaac atcttgaatc atggtttttt 3541 ttgatagtca ttgagggcca cagaagatcc actcaagcgt gattcttcac cttgatacga 3601 gttttcttct ttttcaattt cgtcaaacat tagttatcac tctcgtataa gcatcatttc 3661 caaattcacc atcgactcgt tctttccaac cgaaaattca ttcttcccaa cgagaaacct 3721 ccacttactt tacgtagaag aaatcctcta aatgctcctg cctatcagag cgaacatctt 3781 ccgcaaatcg cctgagtgcg acccgttccc tgcgtaactt ggcatgtctc tccacgctca 3841 tcggtggcgt tgcggtcagt tcggacaatt cccttcccgg aaaatcttct ctgaatcgat 3901 atcgactcca catctcactt tcctttccct ggcctaccgt gcaccagccg attgcgtgat 3961 ccgatctatc gcttccttgg ccttttctgc atagtcacat tcagccgcag gaggacgcat 4021 ctttcccggg aaactcgcct cagcactgac aatgccttcg aggtaacctg ctttgatctg 4081 ctccaccgca taaccaatac gttccaaccc tgaaaacaag gcagccctgg tcgccattac 4141 ctcttgcatg gtgcgtggtc gtgtggcgca tttttctgaa acaaccagcg cataggccgc 4201 gccacgtgcc gtgcttcttc ccaaatcttc cgtccccgct gaggcctccc gaaatacgtc 4261 tacactcgag aaaagtgcag aaattccgac caaaaaaaca aacttcccaa ccatcctgat 4321 attcaaatat ccaaaccgaa aaataaaaat aggcatatcg gaattaacgt cttaaaccat 4381 tcctgtggat gaatttcttg aagcctcgca ctgcttctga aaatcacgta attcataggg 4441 cttcaacggc ctgaattcgg cgcgaaacgt tagtggagtc agcgtaagac caatggtgta 4501 aaacgatcgc cttccttgac gcacttcaaa aatagccttt gcctcgagca gtgacagcaa 4561 atgtgttcga accaccaatc tgtccagcct caaccgcgtc cctatctctg taacattcat 4621 gacggaacct gattcgagaa gcttgtatat ctttctttcc agatcattct tgaacttaac 4681 tctcatgatt ttttaaggtt ttttaagcag ttcacaaaga attcacacct gaatacaaca 4741 tgccacttcg ccgaaaatca ggcccccgat catcaaatta gaaaactacg attcaccttc 4801 agtcgagaat tcgacacgac gattcaagaa tcgcccatgg tctgtcatat tttttgcaac 4861 aggcttctct tcacctcgtc ctcgtgcttg aatcaacccc gaagacactc cgtttttaat 4921 gaggaagtcg cgcaccgaat tagcacgatg ctgcgtgagc gtcagattcg ttttcgcatt 4981 gccagagcta tcagaaaatg catctatcga aattttcttt atcttctttt cgctgatgca 5041 ttgcttcaat aactgagccg tcagctggag gttatcctgc gcaaagcgtg acaattccgc 5101 actacgcttg gcaaagtaga tgaactggag attgagggtg tgatcaatat catcacattc 5161 tttactgtca atcttttgct tgatggcctt cttgtaaatc tcggtcgcat ccgatatcag 5221 cttatctgca tcaaacaaag tgacttcata ttcgtcacca aatagctctt tcaattgcga 5281 tgtccatgac gccccggttt tttcatccac accaccaatc tcaatatgat taccatcaat 5341 actcatatcg ctaccactga ctttcatcat cgaagtcagc ccatcgagct tatttaacca 5401 agcaggagat ttaagccggt tatcaaccac ggcatccaac tgaaatcgtc cagttcccaa 5461 tgctgaattc aagaacgcca gcattttttc ctgatccgat tccgatgaaa aagccgcgct 5521 aatacgaaca ttaccgtcgc gttggacagc aaaaatcaac caaccttctt gtcgatgatc 5581 ttcctgtttc ttcgtagagg aaggtggaag tggtcggtca atcttgccaa tcacctccgc 5641 gctcttttta tcagcagacg actccacatc cttcttcgtc ggcccagcat cttctgccac 5701 acccatcgct gcggactgcg ttctcacaga gggcaatgtc tcagcccctg ccttcaccaa 5761 gggacgggat agaaacccga acttatctat cgtctttgaa aaaaagggag agaatgtcgt 5821 tctcgttaga agagatatca ccaccatgga aaccaacaag ccaagcgcat aaagaagcgc 5881 cttattccta cgccttttcc acaacgcgat ggcctgttgt cgtcgagccg agatttctgc 5941 agacgcaact tcctctgata tttccgtcga aatagctaac gtagttctct ctgcctcctc 6001 gactttctct tctggctcga ccagttttcc caaaacatca ttgagctgca aaagcaaagt 6061 ctcttttaga ttttctgcgc tccccaaata aagaagctct gcgacttggt cacctacttt 6121 cggaaaagtc atctccgctt gatccatgaa aagaccaacc atatcgtttg gtttgcatgg 6181 caccaacagc atatgatgtt tgatgacgct aaaaagcgtt gccgccacca agcttgtcat 6241 cacataggcg gcttgaacag gaacaccaac ctgcatggca acaaactcac acagaaccgg 6301 aaattcaaca gttaaacact gctccgcaat agcacctccg gcgctctcca tttccttgat 6361 cttcccgatc ttctctacga tcgtatcgat ctctctggca aagcgtgcat cgttcgtggg 6421 cgaattaatt gctctataga cgcgcgctac ctgactggac gaaatcgagg cacacatcaa 6481 tgaaatgatt agcgtcggcc ctgccacctc cgttaagcga cgcaaaatct ctgatggcaa 6541 tccgattttt actgacaacg cttgcatgac atccggtgac aacaccatgt cgatggagtg 6601 aatcagatcg atattttctt ttgacatttc tcttctatct tttaataaat gatgttttta 6661 tttttcacgt tactgagcga tcttcgcgtt cttcgccaac tgctgtgcca gagtcattac 6721 tgccttgttc catgcctggc cttcaaggtt ctgacgaatc ttttctttta catcgtcata 6781 agagggaatg gccgtcaggc gtatgtcttc cagcttcaac aaaagccggg tgtcattcca 6841 tttcaccacc gacgtactaa actgccctgg cttcaatctg gcaatctccc gggcaatcgg 6901 aagcggcaaa ctctgctcta cctcgtctcg caccggtagc ttcacgttca cccaccccat 6961 atcaccacgc tgatccctat tactggccag gctataaagt cgagccaact ctgaaaaatc 7021 tgcaccgttc ttcaacctcg taatcagcct tgctcccaat tcatcgtcac ctacctgaat 7081 catcctcacc ttgtattcgt accgccccaa cttctccagg tcacctcgaa aggctttctt 7141 gaccatctca tccgttactg gctctggttt cacatgctca cgcagataca cctgcagcga 7201 cgcagcctct ttcgcctgct cgatcgcttt tttgacctcg gggcggttct ctagtgaaga 7261 atcttttaat gcttcctgtc tcaacagctc ttgcacgatg agttgatttt tataggtagc 7321 acgcaactgg ggcgtatccg actggccgga ggaacgaatc atttcctgta tctgcgccaa 7381 cgtaatttcc ttcccgttca cgatggcgat aaccccgggt ggggcagaaa caggatcacc 7441 gtctgcacca taggcatcca gaccaatcca caaaaaaagc aacataaaca ggagaattct 7501 cccaagtgcg catttagatt tcatacgtct tctcatccat atttttcaaa cggctattca 7561 tcctttattc gccgtctgta ttaataaaaa aactccgcga cccgtgttca agggggatag 7621 gccaacggag caaaaaattg tctgtcacct tttgggggat aggggatggt cacagacaat 7681 ccgaactttt caccgcacag cttctctgac ctcatctcca ttcacgttga gtgtgacaaa 7741 ggcgtatctc aacactcttc cgagaagatg gattcagatg aaatctgtac cgacactcct 7801 tcacaaaggc tcacgggtgt ggccagaaac caaggcgaga tacgctgtat ctcacgccgt 7861 ccgcggacaa cagatatctc tgtgcattac taaccccgat ggacttatta aggtccccgg 7921 ctccctgttc gtccgttaga taatgttccg ggtacgtggt cctgaacgcg accgtcctct 7981 ggtgactaaa cgccatgctc aacttcttat taatgatggc ctgaagaaaa atcctgtcac 8041 agattgcaga aacctcattg ggcatttggg accaaacaag attgatcggg aaggcgcttc 8101 ttgcaagtag ataacaactc gtatcaacat gccgcaactg ctcctcattc agctcaacaa 8161 ttttcaatga ggaaccatcc ggccgatgga aagttctcca cgagcagcac acttctgctc 8221 cagtcgattc attgaccgcc aataacgttg acaaatgttg tgggtgatac caattgtctg 8281 catccaagaa cgcaatgaaa tcgactccct tcccctccgc caacaaggca cctattgcac 8341 gtggggtatt gccattgttt ccgtgagagc gcggcaactt gatatgttcg acaccccatc 8401 catctatctg gttattcgca taaccatctg caaccatgaa atgcaccacc tcagcgtcga 8461 cctcctgtgc aagaacactt tcatgacact gcttcaacat cccaatcgat tctttgtaat 8521 agggcgtaat taccgctatc tttggccttt tccgatacaa gttagtcgaa tactgcgtca 8581 cgcgatgctc gactttcttg acttctgact ctggcttaat ttcgataatc tttctcttct 8641 ttttcttttc ggacttcagg gccaaatcag cgttcgttgc gctatagctg tctgtctcgt 8701 cactatcttt gaatgctgcg attcgtcccg gaacaccaca cttaggacaa aaatattcaa 8761 tctgctcaga gaaatctctc agcggacgac gccaccatcc ttcgctgact tccagtccgt 8821 gatcctcacc acgcgccaag tcaaacgatg ccgccacctc acaaaaatag gcgcgtaatt 8881 tcccattgtt ttgcacaatc gacgccgacc agtgctggtt gatatcgcac tgactaatca 8941 atgaccacat cgcctccggc gcatgaaaat cttgaacagc ggcgagcaaa ctcgcgtgct 9001 ccgagttccc ggagtaatac caacccagtt ccttgagcgg ctctaacgaa gctattccat 9061 gatcatcgtt atggggattc aaattgaaga caccaaacgt ctccttcgcc agatccgcat 9121 atttgaagac attgtttgtc cagagccccc ttctttcctt atccggaatc tcttcaacaa 9181 atacacggca gattccttca aagtctcggt gcatacaagg attcccacca atgaccgcaa 9241 tcgtccccgg gtaatcacgc aaactgcgta ctgccaatct gaagttctcc aacgtcatgt 9301 cgtagaaacg atcctgattg gccaatagac gtgtgcaatt tgagcagtgc agatcacact 9361 tattggtgat gtcgagacag atgattccca tctgcgatgg agaccgcatt gcgtcgagcg 9421 cattttcaaa tgctatttct gacatgtcct aacttccttc gcttagcagt tcatgaaaat 9481 attcaatcgt cttcaacagc ccctccctca accggacctg tggatgccaa cttagtagat 9541 tctgtgctcg agtaatatcc gggcgtctct gtcgcggatc gtcttgcggc aaagggcgat 9601 gaacgatctg acttctagat cccgtcaact cgatcacttc tcttgcaata tcaatgatgc 9661 gaagctcgac aggatttccg atatttaccg gctcataaaa atcagacgaa ctctccatga 9721 gcgcgacaac accaccaatc aaatcgctca cgtagcagaa acttctggtt tgcgccccat 9781 cgccgtagac cgtaattggt tctccacgta tggcttgcac aataaaatta ctcaccaccc 9841 gtccatcgtc caccctcatc cgaggaccgt atgtattgaa gattctcgcc accttgatcg 9901 gcacaccatg ctgacggtgg tagtcaaaaa acaaagtctc cgcgcagcgc ttcccttcgt 9961 cataacaact acggattcct atcggattca ctcttcccca atacgactcc ttctgaggac 10021 tcatttcagg atcgccataa atctcacttg tactggcctg aaatatcttc gcctttaccc 10081 tcttggccag acccaacata ttgattgccc catgcacatt cgtttttaac gtctgaactg 10141 gatcactttg gtagtgcact ggcgaggccg gacaagccaa gttgtagatt tcatcgacct 10201 ccacatacag tggaaaggtc acgtcatggc gaatcagctc aaaattcctc tcctctaata 10261 gatgaccaat attgcggcgc atccccgtat agaaattgtc cagacatagc acctcattgc 10321 ccctcttaag aagggcttca catagatgcg atcccaagaa tcccgcgcca cctgtgacca 10381 atatcctttt catccttgac ctatcgctct tttctcacgc ttcggataac tacgtttagc 10441 gcttcacacc cgtatcttga atattgaaca gggatgcatt ggatttcctg tccgaaagct 10501 ccgtaatcca aggcgtcacc tggggcgact tctgaatcgc tctattggga tcgctaatgt 10561 tcaacgtcgt aattaccaat ggtgtcgcta caccttgaat ccacacggcc tgcccaccat 10621 taaagatcgc cccacttcca atctgactcg tggcgtcgga cgattgatta ttcaaaatcg 10681 ttgcagtcgt cgcagtgggc atacttgcga tggtgtagtt cgcagaatca aataacgttg 10741 cattcagatt cacctgtttc gaggcccctg ccgccggatt cacaaaggtc gcaccaatgc 10801 gatatccatt gaatttcgac gcaccttgca ggctgccatc agctctattc gggtcgccca 10861 actgaaccag tccattgcta gaggaaacag tcgctccggt cgtgccgtcg taactcttat 10921 ccgatacgac cacgttcgaa agaacaacgt ttgccttggc aatcgttgcc gtggttgtcg 10981 tttggctttc cgatgcaagg ctgtagttag caggatcggc aagcaccgta gccaggctca 11041 ccgtctgcaa accagccgca gcgttagtga acgacccgct caccgtgtaa tcggtataag 11101 cagatggatt ggccaaactg ccattagccg cgcttgcatt gcccaggcga actgtcgccg 11161 tccccgcgct agcaatattt gcgttgatcg tcatgtcata gacctttcca taggccacca 11221 cattgcccac cgtcacgttc gccttcgcga tattggccgt cgtgctcagc tgtgttgcac 11281 cagacaacgt gtagttcgtc gtatctgcca acgccacatt cagattgaca gtcttgttat 11341 tccctgcaga cgcgttggca aatccgccga tcaatgtcag atttgtgaag acggtcgcat 11401 tcgccaaact tccgttcgca gtcgatgcat tacccaattg cacctgggcg cttccaggtg 11461 tcagcgacgc attcgtcgtc gtgtcataca ccttgtccga tgccgtcaca ttccccaatg 11521 tcacgcttgc cttcgcgata gtggccgtcg tgctcagttg tgttgcacca gataacgtgt 11581 agttcgtcgt atctgccaac gcgacgttca gattcactgt cttgttgcta cccgcagcag 11641 catcggtaaa gccacctgcc aacgtaagat tcgtgaacga cgtcgcatta gccagacttc 11701 cgttcgccgc tgatgcgtta cccagctgaa cctgggcgct tcccttcgtc agcgctgcgt 11761 tcgtggtggt gtcatagact ttgtccgata ccgctacgtt agcgatcgtc acgttcgcct 11821 tcgcaatggt cgctgttgtg ttcgtttggc ttgacgtact caccgtgtag ttcgtcgtat 11881 cgcccaacgc cacgttcacg ttcaccgtct ggctacccgc cgctgcattc gcatacgaac 11941 cgttcactgt gtagttgtta taagacgtcg ccgacgccaa cgtgccattc gccgcgctgg 12001 cgttacccaa caacac //