BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0064.p (363 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1643 [R] COG2603 Predicted ATPase Pae Pseudomonas aeruginosa 437 e-122 ZybbB [R] COG2603 Predicted ATPase EcZ Escherichia coli O157:H7 ... 281 2e-75 ECs0564 [R] COG2603 Predicted ATPase Ecs Escherichia coli O157:H7 281 2e-75 ybbB [R] COG2603 Predicted ATPase Eco Escherichia coli K12 279 7e-75 STM0513 [R] COG2603 Predicted ATPase Sty Salmonella typhimurium LT2 278 2e-74 >PA1643 [R] COG2603 Predicted ATPase Pae Pseudomonas aeruginosa Length = 369 Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/359 (58%), Positives = 268/359 (74%), Gaps = 1/359 (0%) Query: 3 DLQPSRDLFLADTPMLDARAPVEFGKGAFPTAVNLPLMNDSERHQVGLHYKEEGQQSAIE 62 + Q R+LFL D P++D RAPVE+ KGAFP VN PLMND ER +VG YK+ GQQ+AI Sbjct: 4 NTQHYRELFLDDIPLMDVRAPVEYHKGAFPNTVNRPLMNDIERQKVGTSYKQHGQQAAIA 63 Query: 63 LGHQLVSGAVKEARIAAWADFARTHPDGCLYCFRGGLRSQITQQWLKSEAGIAYPRVAGG 122 LGH+LV GA+K R+AAW FA +P+G LYCFRGGLRSQI QQWLK +AGI YPRV GG Sbjct: 64 LGHELVCGALKAERLAAWKAFAEANPNGYLYCFRGGLRSQIVQQWLKQDAGIDYPRVIGG 123 Query: 123 YKALRHFLMEAIEQALAECAFVVVGGMTGSGKTDVLLQLDNALDLEAYANHRGSSFGKRA 182 YKALR+FL E A+ EC FV+VGG+TG GKT+V+ LDN+LDLE +ANHRGSSFG+RA Sbjct: 124 YKALRNFLFETTRAAVDECDFVLVGGLTGCGKTEVIAALDNSLDLEGHANHRGSSFGRRA 183 Query: 183 SPQPSPIDFEHRLAIALIKLQAQGHHWFALEDESRLIGACALPLALHQRMQSLPMVWLED 242 +PQP+ IDFE+RLAI ++K + +G F LEDE R++G+C+LPL L+Q MQ P+VWLED Sbjct: 184 TPQPAQIDFENRLAIDILKKRHRGVGQFVLEDEGRIVGSCSLPLELYQGMQGYPLVWLED 243 Query: 243 SREGRVERILRDYVSGLCDEYV-TLDPRYGFERYRAHLLAALGKLVKRLGDQRYRQLVQL 301 + E RVERILRDYV L E+ + GF + A+L +L +VKRLG +RY++L + Sbjct: 244 AFEQRVERILRDYVIDLRSEFERVVGVEEGFAAFSAYLQKSLAGIVKRLGGERYQRLAAI 303 Query: 302 METALARQEKDGVVDLHRAWIDALLAQYYDPIYAFQREAKRSRLLFAGRQAEVVDFLRQ 360 + AL Q +DG VD HR WI+ LL +YYDP+YAFQR++K R+ F G QAEV+ +LRQ Sbjct: 304 LVQALEEQGRDGSVDTHRGWIEGLLKEYYDPMYAFQRQSKEDRVEFRGNQAEVIGYLRQ 362 >ZybbB [R] COG2603 Predicted ATPase EcZ Escherichia coli O157:H7 EDL933 Length = 364 Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 154/357 (43%), Positives = 218/357 (61%), Gaps = 4/357 (1%) Query: 5 QPSRDLFLADTPMLDARAPVEFGKGAFPTAVNLPLMNDSERHQVGLHYKEEGQQSAIELG 64 Q R L +ADTP++D RAP+EF +GA P A+NLPLMN+ ER VG YK++G +A+ LG Sbjct: 8 QDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALG 67 Query: 65 HQLVSGAVKEARIAAWADFARTHPDGCLYCFRGGLRSQITQQWLKSEAGIAYPRVAGGYK 124 H+LV+G +++ R+ AW +P G L C RGG RS I Q WL + AGI YP V GGYK Sbjct: 68 HKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLHA-AGIDYPLVEGGYK 126 Query: 125 ALRHFLMEAIEQALAECAFVVVGGMTGSGKTDVLLQLDNALDLEAYANHRGSSFGKRASP 184 ALR ++A + LA+ V++GG TGSGKT ++ Q N +DLE A HRGS+FG+ P Sbjct: 127 ALRQTAIQATIE-LAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFGRTLQP 185 Query: 185 QPSPIDFEHRLAIALIKLQA-QGHHWFALEDESRLIGACALPLALHQRMQSLPMVWLEDS 243 Q S FE+ LA ++K A Q + LEDESR+IG+ LP L +RM + +ED Sbjct: 186 QLSQASFENLLAAEMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIAVVEDP 245 Query: 244 REGRVERILRDYVSGLCDEYV-TLDPRYGFERYRAHLLAALGKLVKRLGDQRYRQLVQLM 302 E R+ER+ +Y + ++ G++ Y +L L + +RLG QRY +L + Sbjct: 246 FEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNELAARL 305 Query: 303 ETALARQEKDGVVDLHRAWIDALLAQYYDPIYAFQREAKRSRLLFAGRQAEVVDFLR 359 + AL Q G D H AW+ LL +YYDP+Y +Q E K +++F G AEV ++++ Sbjct: 306 DAALTTQLTTGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEWVK 362 >ECs0564 [R] COG2603 Predicted ATPase Ecs Escherichia coli O157:H7 Length = 364 Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 154/357 (43%), Positives = 218/357 (61%), Gaps = 4/357 (1%) Query: 5 QPSRDLFLADTPMLDARAPVEFGKGAFPTAVNLPLMNDSERHQVGLHYKEEGQQSAIELG 64 Q R L +ADTP++D RAP+EF +GA P A+NLPLMN+ ER VG YK++G +A+ LG Sbjct: 8 QDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALG 67 Query: 65 HQLVSGAVKEARIAAWADFARTHPDGCLYCFRGGLRSQITQQWLKSEAGIAYPRVAGGYK 124 H+LV+G +++ R+ AW +P G L C RGG RS I Q WL + AGI YP V GGYK Sbjct: 68 HKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLHA-AGIDYPLVEGGYK 126 Query: 125 ALRHFLMEAIEQALAECAFVVVGGMTGSGKTDVLLQLDNALDLEAYANHRGSSFGKRASP 184 ALR ++A + LA+ V++GG TGSGKT ++ Q N +DLE A HRGS+FG+ P Sbjct: 127 ALRQTAIQATIE-LAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFGRTLQP 185 Query: 185 QPSPIDFEHRLAIALIKLQA-QGHHWFALEDESRLIGACALPLALHQRMQSLPMVWLEDS 243 Q S FE+ LA ++K A Q + LEDESR+IG+ LP L +RM + +ED Sbjct: 186 QLSQASFENLLAAEMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIAVVEDP 245 Query: 244 REGRVERILRDYVSGLCDEYV-TLDPRYGFERYRAHLLAALGKLVKRLGDQRYRQLVQLM 302 E R+ER+ +Y + ++ G++ Y +L L + +RLG QRY +L + Sbjct: 246 FEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNELAARL 305 Query: 303 ETALARQEKDGVVDLHRAWIDALLAQYYDPIYAFQREAKRSRLLFAGRQAEVVDFLR 359 + AL Q G D H AW+ LL +YYDP+Y +Q E K +++F G AEV ++++ Sbjct: 306 DAALTTQLTTGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEWVK 362 >ybbB [R] COG2603 Predicted ATPase Eco Escherichia coli K12 Length = 364 Score = 279 bits (714), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 154/357 (43%), Positives = 217/357 (60%), Gaps = 4/357 (1%) Query: 5 QPSRDLFLADTPMLDARAPVEFGKGAFPTAVNLPLMNDSERHQVGLHYKEEGQQSAIELG 64 Q R L +ADTP++D RAP+EF GA P A+NLPLMN+ ER VG YK++G +A+ LG Sbjct: 8 QDYRALLIADTPIIDVRAPIEFEHGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALG 67 Query: 65 HQLVSGAVKEARIAAWADFARTHPDGCLYCFRGGLRSQITQQWLKSEAGIAYPRVAGGYK 124 H+LV+G +++ R+ AW +P G L C RGG RS I Q WL + AGI YP V GGYK Sbjct: 68 HKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQSWLHA-AGIDYPLVEGGYK 126 Query: 125 ALRHFLMEAIEQALAECAFVVVGGMTGSGKTDVLLQLDNALDLEAYANHRGSSFGKRASP 184 ALR ++A + LA+ V++GG TGSGKT ++ Q N +DLE A HRGS+FG+ P Sbjct: 127 ALRQTAIQATIE-LAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFGRTLQP 185 Query: 185 QPSPIDFEHRLAIALIKLQA-QGHHWFALEDESRLIGACALPLALHQRMQSLPMVWLEDS 243 Q S FE+ LA ++K A Q + LEDESR+IG+ LP L +RM + +ED Sbjct: 186 QLSQASFENLLAAEMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIAVVEDP 245 Query: 244 REGRVERILRDYVSGLCDEYV-TLDPRYGFERYRAHLLAALGKLVKRLGDQRYRQLVQLM 302 E R+ER+ +Y + ++ G++ Y +L L + +RLG QRY +L + Sbjct: 246 FEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNELAARL 305 Query: 303 ETALARQEKDGVVDLHRAWIDALLAQYYDPIYAFQREAKRSRLLFAGRQAEVVDFLR 359 + AL Q G D H AW+ LL +YYDP+Y +Q E K +++F G AEV ++++ Sbjct: 306 DAALTTQLTTGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEWVK 362 >STM0513 [R] COG2603 Predicted ATPase Sty Salmonella typhimurium LT2 Length = 364 Score = 278 bits (710), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 156/364 (42%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 1 MADLQPSRD---LFLADTPMLDARAPVEFGKGAFPTAVNLPLMNDSERHQVGLHYKEEGQ 57 M D Q ++D L LADTP++D RAP+EF +GA P A+NLPLM D ER VG YK +G Sbjct: 1 MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMMDDERAAVGTCYKRQGA 60 Query: 58 QSAIELGHQLVSGAVKEARIAAWADFARTHPDGCLYCFRGGLRSQITQQWLKSEAGIAYP 117 +A+ LGH+LV G +++ R+ AW + P+G L C RGG RS I Q+WL+ E GI P Sbjct: 61 DAALALGHRLVCGDIRQQRLEAWKAAYQRFPNGYLCCARGGQRSHIVQRWLQ-ETGIDCP 119 Query: 118 RVAGGYKALRHFLMEAIEQALAECAFVVVGGMTGSGKTDVLLQLDNALDLEAYANHRGSS 177 + GGYKALR ++A Q LA+ +++GG TGSGKT ++ Q N +DLE A HRGSS Sbjct: 120 LIEGGYKALRQTAIQATWQ-LAQKPILLIGGCTGSGKTQLVRQQPNGVDLEGLARHRGSS 178 Query: 178 FGKRASPQPSPIDFEHRLAIALIKLQA-QGHHWFALEDESRLIGACALPLALHQRMQSLP 236 FG+ +PQ S FE++LA+ L+K+ A Q + LEDE R IGA LP L +RM P Sbjct: 179 FGRTLNPQLSQASFENKLAVELLKINARQTLKRWVLEDEGRTIGANHLPECLRERMAQAP 238 Query: 237 MVWLEDSREGRVERILRDYVSGLCDEYV-TLDPRYGFERYRAHLLAALGKLVKRLGDQRY 295 + +ED R+ER+ +Y + ++ G++ Y +L L + +RLG QR+ Sbjct: 239 IAVVEDPFALRLERLREEYFIRMHHDFTHAYGDEAGWQAYSEYLHHGLFAIRRRLGLQRF 298 Query: 296 RQLVQLMETALARQEKDGVVDLHRAWIDALLAQYYDPIYAFQREAKRSRLLFAGRQAEVV 355 +L ++ ALA Q G D H AW+ LL +YYDP+Y +Q E K + ++F G +V Sbjct: 299 AELTDTLDRALAEQLSSGSTDGHMAWLVPLLNEYYDPMYRYQLEKKAANIVFRGTWQDVA 358 Query: 356 DFLR 359 ++L+ Sbjct: 359 NWLK 362