BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0058.p (483 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1156 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 266 6e-71 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 178 2e-44 tsr [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escheri... 177 4e-44 ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc... 176 8e-44 Ztsr [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher... 175 3e-43 >RSc1156 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 266 bits (681), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 164/358 (45%), Positives = 232/358 (64%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++N +VR L++ L F+ MIVVGA VG+ AL AN +TE VH I+ R++L+NDAYKD Sbjct: 5 LKNTSVRAGLLAILVTFALMIVVGAAVGVLALSTANVSTERVHAISARSMLLNDAYKDMM 64 Query: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL 120 R R R+Y L E + +AL SAE ++SL LD + P +EG D A + Sbjct: 65 RARTGLARVYGMLRENPGTPLASNALDSAESGVKKSLAQLDAFKSAPAIEGVDQALRQAA 124 Query: 121 LDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT 180 +A+A + +++A L+A DAA Y+ +N ++ GA +S ++ +QK + +L Sbjct: 125 AQAAQAHADAVQRAMAALRASDAAAYATINAKDVTSSGAAWSVEIERFQKLSSQLAQEEA 184 Query: 181 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 Q Y L+V V G++ A+ L+ VH+ L+ V+TPLN AV +L VA GDL+ +V Sbjct: 185 DGGQARYGLIVKFVSVGIVMALALIAAVHYALKAFVVTPLNDAVDVLTRVAEGDLSVQVR 244 Query: 241 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 NE+GRL SA+ M+ +LL TV +VRSSSD+++T A EIA+GN+DLSSRTEQQ++SL Sbjct: 245 EGGRNELGRLLSAVARMRASLLQTVRQVRSSSDAVNTGAHEIASGNLDLSSRTEQQSASL 304 Query: 301 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRK 358 E+TAASME++T TV N+ENA QA+ LA SA+ AS+GGEVV VV TM I+ SSRK Sbjct: 305 EKTAASMEQMTSTVTNNSENARQASALAASAADLASRGGEVVRGVVSTMDEISASSRK 362 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/286 (39%), Positives = 163/286 (56%), Gaps = 11/286 (3%) Query: 77 GDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTELLDSAKALNEVLKKATD 136 G A + ++ A T + + K ++Y LP Q A E+ + + L + Sbjct: 82 GSGATVAELMQGATNTLKLTEKNWEQYEALPRDPRQSEAAFLEIKRTYDIYHGALAELIQ 141 Query: 137 LLKAGDAAGYSQLNNNFISKGGARFSTALD----AYQKRAMELNDNVTTQRQREYNLVVW 192 LL AG N F + + A + AY ++ L D YN +W Sbjct: 142 LLGAGKI-------NEFFDQPTQSYQDAFEKQYMAYMQQNDRLYDIAVEDNNSSYNQAMW 194 Query: 193 LVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVEVASSNEIGRLFS 252 ++V+ LI + +++ V F ++ ++ P+NR + + +A+GDL +++V SNE+G+L Sbjct: 195 VLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAE 254 Query: 253 AIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSLEETAASMEELTG 312 +R MQ L+ TV VR+ +++I + A EIA GN DLSSRTEQQA+SLEETAASME+LT Sbjct: 255 NLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTA 314 Query: 313 TVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRK 358 TVKQNAENA QA+ LA SAS TA KGG+VV VV TM+ I SS+K Sbjct: 315 TVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASSSQK 360 >tsr [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escherichia coli K12 Length = 551 Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 195/362 (53%), Gaps = 7/362 (1%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++ + + SL+ LA+F + + G+ AL + I ++ +N ++ Sbjct: 2 LKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALL 61 Query: 61 RTRAAHGRM-YATLMEK---GDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPAT 116 +TR R +M++ G + + ++SA ++ +++ K +Y LP Q A Sbjct: 62 QTRNTLNRAGIRYMMDQNNIGSGSTVAELMESASISLKQAEKNWADYEALPRDPRQSTAA 121 Query: 117 KTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELN 176 E+ + + L + LL AG + G F AY ++ L+ Sbjct: 122 AAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDG---FEKQYVAYMEQNDRLH 178 Query: 177 DNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLT 236 D + Y+ +W++V +I + ++ V F ++ ++ P+NR + + +A GDL Sbjct: 179 DIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLV 238 Query: 237 TKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQ 296 +EV SNE+G+L ++R MQ L+ TV VR+ +++I + A EIA GN DLSSRTEQQ Sbjct: 239 KPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQ 298 Query: 297 ASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSS 356 A+SLEETAASME+LT TVKQNAENA QA+ LA SAS TA +GG+VV VV TM+ I+ SS Sbjct: 299 AASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSS 358 Query: 357 RK 358 +K Sbjct: 359 QK 360 >ECs5315 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia coli O157:H7 Length = 554 Score = 176 bits (447), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 194/362 (53%), Gaps = 7/362 (1%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++ + + SL+ LA+F + + G+ AL + I ++ +N ++ Sbjct: 2 LKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALL 61 Query: 61 RTRAAHGRM-YATLMEK---GDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPAT 116 +TR R +M++ G + + ++SA ++ +++ K +Y LP Q A Sbjct: 62 QTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQSTAA 121 Query: 117 KTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELN 176 E+ + + L + LL AG + G F AY ++ L Sbjct: 122 AAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDG---FEKQYVAYMEQNDRLY 178 Query: 177 DNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLT 236 D + Y+ +W++V +I + ++ V F ++ ++ P+NR + + +A GDL Sbjct: 179 DIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLV 238 Query: 237 TKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQ 296 +EV SNE+G+L ++R MQ L+ TV VR+ +++I + A EIA GN DLSSRTEQQ Sbjct: 239 KPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQ 298 Query: 297 ASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSS 356 A+SLEETAASME+LT TVKQNAENA QA+ LA SAS TA +GG+VV VV TM+ I+ SS Sbjct: 299 AASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSS 358 Query: 357 RK 358 +K Sbjct: 359 QK 360 >Ztsr [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 554 Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 121/362 (33%), Positives = 193/362 (53%), Gaps = 7/362 (1%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 ++ + + SL+ LA+F + + G+ AL + I ++ +N ++ Sbjct: 2 LKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQTIRQQQSTLNGSWVALL 61 Query: 61 RTRAAHGRM-YATLMEK---GDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPAT 116 +TR R +M++ G + + ++SA ++ +++ K +Y LP Q A Sbjct: 62 QTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAEKNWADYEALPRDPRQSTAA 121 Query: 117 KTELLDSAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELN 176 E+ + + L + LL AG + G F AY ++ L Sbjct: 122 AAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQDG---FEKQYVAYMEQNDRLY 178 Query: 177 DNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLT 236 D + Y+ +W++V +I + ++ V F ++ ++ P+NR + + +A GDL Sbjct: 179 DIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASLVAPMNRLIDSIRHIAGGDLV 238 Query: 237 TKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQ 296 +EV SNE+G+L ++R MQ L+ TV VR+ +++I + A EIA GN DL SRTEQQ Sbjct: 239 KPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANAIYSGASEIATGNNDLXSRTEQQ 298 Query: 297 ASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSS 356 A+SLEETAASME+LT TVKQNAENA QA+ LA SAS TA +GG+VV VV TM+ I+ SS Sbjct: 299 AASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSS 358 Query: 357 RK 358 +K Sbjct: 359 QK 360