BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0057.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0826 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 216 3e-56 SMa1440 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 180 3e-45 AGl3338 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 178 1e-44 Cgl0448 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 148 1e-35 BS_ycbC [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 99 1e-20 >RSp0826 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Rso Ralstonia solanacearum Length = 311 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 123/303 (40%), Positives = 166/303 (54%), Gaps = 54/303 (17%) Query: 1 MSQYTPQDLKQILSSGLLSFPLT------DFDE-----------------------QGDF 31 MS+YTP + + +GLLSFP+T FDE G+F Sbjct: 1 MSRYTPSEFAHQIGTGLLSFPVTHFKSDLSFDEAAYRANLSWLFSHEAAGLFAAGGTGEF 60 Query: 32 RPKTYIE--------------RLEWLAPYGASALAVPGRARAHVCAS-----------TE 66 T E RL +AP G +A A TE Sbjct: 61 FSLTPAETDRVVRAAVAETGGRLPVIAPAGYGTAMAKEYCQAAEAAGADGILLLPPYLTE 120 Query: 67 ASQDGIAAHVEAVCKSVKFGVIIYNRAVCKLNADTLQKLADRCPNLIGFKDGIGEIEPMV 126 AS DG+AAHVE VCKS + GVI+YNRA L+ + L++LA+RCPNL+GFKDG+G++E M Sbjct: 121 ASADGVAAHVEQVCKSTRLGVIVYNRANQVLDENHLERLAERCPNLVGFKDGVGDLELMT 180 Query: 127 HIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDT 186 I +LG+RFTY+GGLPTAE +A Y +GV YSSA+FNF+PK A++FY A+ DH Sbjct: 181 RIYSRLGERFTYIGGLPTAETFAMPYLTMGVTTYSSAIFNFVPKFALDFYAAVRAADHAK 240 Query: 187 VGKLIDEFFLPYLAAWRGCTVCVVAMCKAGARIAGHDAGPVRTPLTDCTPEEHEELAALM 246 ++++F LPY+A V++ KAG ++ G AGPVR PLTD T E EL+AL+ Sbjct: 241 AYAMLNDFVLPYIALRNRKRGYAVSIVKAGMKVIGRSAGPVRAPLTDLTEAELAELSALV 300 Query: 247 KKL 249 ++ Sbjct: 301 ARI 303 >SMa1440 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Sme Sinorhizobium meliloti Length = 301 Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 89/183 (48%), Positives = 119/183 (65%) Query: 65 TEASQDGIAAHVEAVCKSVKFGVIIYNRAVCKLNADTLQKLADRCPNLIGFKDGIGEIEP 124 TEA Q+GI AHV+AVC S GVI+YNRA NADT+ +LA+ CPNLIGFKDG G+++ Sbjct: 115 TEAPQEGIYAHVKAVCDSTGLGVILYNRANSVANADTVARLAEACPNLIGFKDGTGKVDL 174 Query: 125 MVHIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDH 184 + H+ KLGDR Y+GG+PT E++A + +GV YSSAVFNF+P+ A FY+A+ D Sbjct: 175 VRHVTAKLGDRLCYIGGMPTHELFAEGFNGVGVTTYSSAVFNFVPELAQRFYRAMRAGDR 234 Query: 185 DTVGKLIDEFFLPYLAAWRGCTVCVVAMCKAGARIAGHDAGPVRTPLTDCTPEEHEELAA 244 + ++ FF P+ A V++ KAG +AG GPVR PL D T EE E L Sbjct: 235 AVMEGILHTFFFPFAALRDRKAGYPVSIIKAGVELAGFAPGPVRPPLVDLTGEEREILQG 294 Query: 245 LMK 247 L++ Sbjct: 295 LIE 297 >AGl3338 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 117/181 (64%) Query: 66 EASQDGIAAHVEAVCKSVKFGVIIYNRAVCKLNADTLQKLADRCPNLIGFKDGIGEIEPM 125 +A Q+G+ AH++ VC+SV GV++YNR L ADTL +L D CPNL+GFKDG G+I + Sbjct: 117 DAPQEGLYAHIKKVCQSVGIGVMVYNRDNSVLQADTLARLCDECPNLVGFKDGTGDIGLV 176 Query: 126 VHIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHD 185 I K+GDR YLGG+PTAE++A AY G YSSAVFNF+P A EFY A+ + Sbjct: 177 RQITAKMGDRLMYLGGMPTAELFAEAYLGAGFTTYSSAVFNFVPGLANEFYAALRAGERA 236 Query: 186 TVGKLIDEFFLPYLAAWRGCTVCVVAMCKAGARIAGHDAGPVRTPLTDCTPEEHEELAAL 245 T +++ +FF P++A V+ KAG R+ G +AGPVR PL D T EE L AL Sbjct: 237 TCERILVDFFYPFMAIRNRAKGYAVSAVKAGVRLQGFNAGPVRAPLKDLTNEEIGMLEAL 296 Query: 246 M 246 + Sbjct: 297 I 297 >Cgl0448 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Cgl Corynebacterium glutamicum Length = 316 Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 107/186 (57%) Query: 65 TEASQDGIAAHVEAVCKSVKFGVIIYNRAVCKLNADTLQKLADRCPNLIGFKDGIGEIEP 124 TE +G+ H AVC+S GVI+YNRA + + + +L++R PN IGFKDG G IE Sbjct: 119 TECDAEGLYNHAAAVCESTSLGVIVYNRANAIYSPEVIARLSERYPNFIGFKDGTGNIEH 178 Query: 125 MVHIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDH 184 + I GDR YLGGLPTAE +A +G+ YSSA+FNFIP A+ FY + +D Sbjct: 179 LAKITTLCGDRLFYLGGLPTAETFALPLLQMGMSTYSSAMFNFIPDFALSFYADVRAQDS 238 Query: 185 DTVGKLIDEFFLPYLAAWRGCTVCVVAMCKAGARIAGHDAGPVRTPLTDCTPEEHEELAA 244 V + + +F LPYL V++ K G + G +AG VR PL + + ++ +L+ Sbjct: 239 AAVKQKLSDFVLPYLDIRDRAQGYGVSIVKGGLKAVGRNAGGVRPPLRNLSEQDIADLSD 298 Query: 245 LMKKLG 250 L+ G Sbjct: 299 LLATSG 304 >BS_ycbC [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Bsu Bacillus subtilis Length = 308 Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 2/183 (1%) Query: 67 ASQDGIAAHVEAVCKSVKFGVIIYNRAVCKLNADTLQKLADRCPNLIGFKDGIGEIEPMV 126 Q+G+ + + + +S I+Y R L+ + +++L + C L+G KDG+G ++ + Sbjct: 115 GEQEGLYQYAKTIIESTDLNAILYQRDNAVLSVEQIKRLTE-CEQLVGVKDGVGNMDLNI 173 Query: 127 HIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDT 186 ++ +GDR +L G+P AEV AY +G YSSA+ N+IP + FY A+ + + Sbjct: 174 NLVYTIGDRLGWLNGMPMAEVTMPAYLPIGFHSYSSAISNYIPHISRMFYDALKNGNDEL 233 Query: 187 VGKLIDEFFLPYLAAWRGCTVCVVAMCKAGARIAGHDA-GPVRTPLTDCTPEEHEELAAL 245 V +L LP + V++ KAG I G + R P+ + +++L A+ Sbjct: 234 VKELYRHVILPINDIRKQRKGYAVSLIKAGMEIMGLNVRNTARPPVGPVEKDHYQQLEAI 293 Query: 246 MKK 248 +K+ Sbjct: 294 LKQ 296