BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0055.p         (164 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1018 [K] COG1959 Predicted transcriptional regulator Rso Rals...   247   1e-65
YPO2897 [K] COG1959 Predicted transcriptional regulator Ype Yers...   166   3e-41
NMB1378 [K] COG1959 Predicted transcriptional regulator Nme Neis...   164   9e-41
NMA1593 [K] COG1959 Predicted transcriptional regulator NmA Neis...   164   9e-41
PA3815 [K] COG1959 Predicted transcriptional regulator Pae Pseud...   163   2e-40

>RSc1018 [K] COG1959 Predicted transcriptional regulator Rso Ralstonia
           solanacearum
          Length = 193

 Score =  247 bits (630), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/143 (82%), Positives = 131/143 (91%), Gaps = 2/143 (1%)

Query: 1   MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60
           MRLTTKGRFAVTAMIDLALRQ +GPVTL+ IS+RQ+ISLSYLEQLFGKLRRH+IVESVRG
Sbjct: 1   MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60

Query: 61  PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSASHPGGARCMTHDLWSTLNE 120
           PGGGY+LAR+A DV+VADIIIAVDEPLDATQCGGK NC    H G  RCMTHDLW+TLN+
Sbjct: 61  PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHSG--RCMTHDLWATLNQ 118

Query: 121 KMVEYLDSVSLQDLVDQQKEPKP 143
           KMVEYLDSVSLQ+LVDQQ+E +P
Sbjct: 119 KMVEYLDSVSLQNLVDQQRERQP 141


>YPO2897 [K] COG1959 Predicted transcriptional regulator Ype Yersinia pestis
          Length = 164

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 114/161 (70%), Gaps = 6/161 (3%)

Query: 1   MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60
           MRLT+KGR+AVTAM+D+AL    GPV L+ ISERQ ISLSYLEQLF +LR++ +V SVRG
Sbjct: 1   MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60

Query: 61  PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSASHPGGARCMTHDLWSTLNE 120
           PGGGY L + A+ ++V  +I AVDE +DAT+C GKE C      GG RC+TH LW  L+E
Sbjct: 61  PGGGYLLGKDASAIAVGAVITAVDESVDATRCQGKEGCQ-----GGNRCLTHTLWRDLSE 115

Query: 121 KMVEYLDSVSLQDLVDQQKEPKPAEHRAADSQSVVVMHRPQ 161
           ++  +L++++L +LV+ Q   + A+ +  D++      RPQ
Sbjct: 116 RISSFLNNITLAELVNNQDILEVADRQNNDTRR-TANGRPQ 155


>NMB1378 [K] COG1959 Predicted transcriptional regulator Nme Neisseria
           meningitidis MC58
          Length = 148

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 106/140 (75%), Gaps = 5/140 (3%)

Query: 1   MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60
           MRLTTKGRFAVTAM+DLA+    G V LSAISERQ ISLSYLEQLFGKLRR  +VES+RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 61  PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSASHPGGARCMTHDLWSTLNE 120
           PGGGY LA  AA +++A II A ++ LDATQCG K NCH      GA C+THDLW  LN+
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQCGSKANCHH-----GAPCLTHDLWENLNK 115

Query: 121 KMVEYLDSVSLQDLVDQQKE 140
            + +YL SV+LQ +++Q+  
Sbjct: 116 TINDYLGSVTLQSIIEQKNN 135


>NMA1593 [K] COG1959 Predicted transcriptional regulator NmA Neisseria
           meningitidis Z2491
          Length = 148

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 106/140 (75%), Gaps = 5/140 (3%)

Query: 1   MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60
           MRLTTKGRFAVTAM+DLA+    G V LSAISERQ ISLSYLEQLFGKLRR  +VES+RG
Sbjct: 1   MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60

Query: 61  PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSASHPGGARCMTHDLWSTLNE 120
           PGGGY LA  AA +++A II A ++ LDATQCG K NCH      GA C+THDLW  LN+
Sbjct: 61  PGGGYILAAPAARINIAQIIAAAEDRLDATQCGSKANCHH-----GAPCLTHDLWENLNK 115

Query: 121 KMVEYLDSVSLQDLVDQQKE 140
            + +YL SV+LQ +++Q+  
Sbjct: 116 TINDYLGSVTLQSIIEQKNN 135


>PA3815 [K] COG1959 Predicted transcriptional regulator Pae Pseudomonas
           aeruginosa
          Length = 163

 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 104/139 (74%), Gaps = 5/139 (3%)

Query: 1   MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60
           MRLTTKGR+AVTAM+DLAL   +GPV+L+ ISERQ ISLSYLEQLF KLRR  +V SVRG
Sbjct: 1   MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60

Query: 61  PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSASHPGGARCMTHDLWSTLNE 120
           PGGGY L+R  + + VA +I AV+E +DAT+C G+ +CHS     G  C+TH LW  L+ 
Sbjct: 61  PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQGDCHS-----GDTCLTHHLWCDLSL 115

Query: 121 KMVEYLDSVSLQDLVDQQK 139
           ++ E+L  +SL DLV +Q+
Sbjct: 116 QIHEFLSGISLADLVSRQE 134