BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0039.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1261 [T] COG2204 Response regulator containing CheY-like rece... 288 6e-78 PA5125 [T] COG2204 Response regulator containing CheY-like recei... 220 2e-57 STM4005 [T] COG2204 Response regulator containing CheY-like rece... 202 5e-52 ZglnG [T] COG2204 Response regulator containing CheY-like receiv... 199 3e-51 glnG [T] COG2204 Response regulator containing CheY-like receive... 199 4e-51 >RSc1261 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Rso Ralstonia solanacearum Length = 502 Score = 288 bits (737), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 138/175 (78%), Positives = 160/175 (91%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASG 60 MKPIWIVDDD+SIRWVLEKALARE+L ++SF++ARDA+ AL+ TPQVL+SD+RMPG SG Sbjct: 1 MKPIWIVDDDQSIRWVLEKALARESLLSRSFTNARDALNALEEETPQVLISDVRMPGGSG 60 Query: 61 LELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 L+LLQ +K +HPG+PVII+TA+SDLDSAV+AFQGGAFEYLAKPFDVD+AVELIRRAL+ES Sbjct: 61 LDLLQAIKGRHPGLPVIIMTAYSDLDSAVAAFQGGAFEYLAKPFDVDRAVELIRRALEES 120 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVGR 175 LRE +I+ PEILGQAPAMQDVFRAIGRLSQSNVTVLITGESG+GKELV R Sbjct: 121 LREEEIDDRLGDAPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGTGKELVAR 175 >PA5125 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Pae Pseudomonas aeruginosa Length = 476 Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 110/172 (63%), Positives = 134/172 (77%), Gaps = 2/172 (1%) Query: 4 IWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASGLEL 63 +WIVDDD SIRWVLEKAL +E + T SF SA I L P V++SDIRMPGASGL+L Sbjct: 7 VWIVDDDRSIRWVLEKALQQEGMTTVSFDSADSVIGRLGRQQPDVIISDIRMPGASGLDL 66 Query: 64 LQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDESLRE 123 L ++ HP +PVII+TA SDLDSAV+++QGGAFEYL KPFDVD+AV L++RA + + Sbjct: 67 LAQIRELHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQ 126 Query: 124 TDIEQGAAQ--TPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELV 173 +E A Q TPEI+G+APAMQ+VFRAIGRLS SN+TVLI GESG+GKELV Sbjct: 127 QGLELPANQARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELV 178 >STM4005 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Sty Salmonella typhimurium LT2 Length = 469 Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 100/175 (57%), Positives = 132/175 (75%), Gaps = 4/175 (2%) Query: 4 IWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASGLEL 63 +W+VDDD SIRWVLE+ALA L +F + + +AAL + TP VL+SDIRMPG GL L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65 Query: 64 LQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRAL---DES 120 L+ +K +HP +PVII+TA SDLD+AVSA+Q GAF+YL KPFD+D+AV L+ RA+ E Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVGR 175 + +IE T +++G+APAMQDVFR IGRLS+S+++VLI GESG+GKELV Sbjct: 126 QQPRNIEVNGPTT-DMIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 >ZglnG [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains EcZ Escherichia coli O157:H7 EDL933 Length = 469 Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 98/174 (56%), Positives = 128/174 (73%), Gaps = 2/174 (1%) Query: 4 IWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASGLEL 63 +W+VDDD SIRWVLE+ALA L +F + + + AL + TP VL+SDIRMPG GL L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGXEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 64 LQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDESLRE 123 L+ +K +HP +PVII+TA SDLD+AVSA+Q GAF+YL KPFD+D+AV L+ RA+ + Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 124 TDIE--QGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVGR 175 Q T +I+G+APAMQDVFR IGRLS+S+++VLI GESG+GKELV Sbjct: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 >glnG [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Eco Escherichia coli K12 Length = 469 Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 98/174 (56%), Positives = 128/174 (73%), Gaps = 2/174 (1%) Query: 4 IWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASGLEL 63 +W+VDDD SIRWVLE+ALA L +F + + + AL + TP VL+SDIRMPG GL L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 64 LQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDESLRE 123 L+ +K +HP +PVII+TA SDLD+AVSA+Q GAF+YL KPFD+D+AV L+ RA+ + Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 124 TDIE--QGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVGR 175 Q T +I+G+APAMQDVFR IGRLS+S+++VLI GESG+GKELV Sbjct: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179