BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0015.p         (201 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2416 [R] COG0795 Predicted permeases Rso Ralstonia solanacearum    151   8e-37
STM4479 [R] COG0795 Predicted permeases Sty Salmonella typhimuri...   100   2e-21
yjgP [R] COG0795 Predicted permeases Eco Escherichia coli K12          98   1e-20
ZyjgP [R] COG0795 Predicted permeases EcZ Escherichia coli O157:...    98   1e-20
ECs5238 [R] COG0795 Predicted permeases Ecs Escherichia coli O15...    98   1e-20

>RSc2416 [R] COG0795 Predicted permeases Rso Ralstonia solanacearum
          Length = 372

 Score =  151 bits (382), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 116/178 (65%), Gaps = 4/178 (2%)

Query: 2   RNIFV----DGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGL 57
           RN+FV      K  V +AK GE    P+G+++VV+++GRRY+G+PG  D++IV+F+RYG+
Sbjct: 172 RNLFVANAEQDKIGVALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGV 231

Query: 58  LIGNQSQNAAGERSARALQMNELVAKNDGYARGELLWRIALPFMALTLMLLAIPLSFVNP 117
            + N+   A      ++    EL++       GEL+WRI LP +AL  +L+AIPL++VNP
Sbjct: 232 KVANKPPQADANLPTKSRPTTELLSNPTPENMGELVWRIGLPLLALNFVLIAIPLAYVNP 291

Query: 118 RAGRSLGLLVALLLFVVYSNTVSVFQASVAQGRATFMMAWWPVHVVVVLLIVGMFALR 175
           R GR   ++ A+L+++ YSN +++ QA VAQG+ + M+AWWP+H+   +    +F  R
Sbjct: 292 RLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKMSAMLAWWPIHLAAFVCAGLLFRFR 349


>STM4479 [R] COG0795 Predicted permeases Sty Salmonella typhimurium LT2
          Length = 366

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 7   DGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGLLIGNQSQNA 66
           + + SVVVA  G      DG + V +N+G R++G+  L DF+I DF+ Y  +IG+Q+  A
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAV-A 240

Query: 67  AGERSARALQMNELVAKNDGYARGELLWRIALPFMALTLMLLAIPLSFVNPRAGRSLGLL 126
                   + M  L   ++  AR EL WRI L F    + L+ +PLS VNPR GR L +L
Sbjct: 241 LDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML 300

Query: 127 VALLLFVVYSNTVSVFQASVAQGRATFMMAWWPVHVVVVLLIVGM 171
            A+LL++++    +  +++  +G+   ++  W V+++ + L +G+
Sbjct: 301 PAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLALAIGL 345


>yjgP [R] COG0795 Predicted permeases Eco Escherichia coli K12
          Length = 366

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 1/163 (0%)

Query: 7   DGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGLLIGNQSQNA 66
           + + SVVVA  G      DG + V +NQG R++G+  L DF+I DF+ Y  +IG+Q+  A
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAV-A 240

Query: 67  AGERSARALQMNELVAKNDGYARGELLWRIALPFMALTLMLLAIPLSFVNPRAGRSLGLL 126
                   + M  L   +   AR EL WRI L F    + L+ +PLS VNPR GR L +L
Sbjct: 241 LDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML 300

Query: 127 VALLLFVVYSNTVSVFQASVAQGRATFMMAWWPVHVVVVLLIV 169
            A+LL++++    +  +++  +G+    +  W V+++ + L +
Sbjct: 301 PAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAI 343


>ZyjgP [R] COG0795 Predicted permeases EcZ Escherichia coli O157:H7 EDL933
          Length = 366

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 1/163 (0%)

Query: 7   DGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGLLIGNQSQNA 66
           + + SVVVA  G      DG + V +NQG R++G+  L DF+I DF+ Y  +IG+Q+  A
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAV-A 240

Query: 67  AGERSARALQMNELVAKNDGYARGELLWRIALPFMALTLMLLAIPLSFVNPRAGRSLGLL 126
                   + M  L   +   AR EL WRI L F    + L+ +PLS VNPR GR L +L
Sbjct: 241 LDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML 300

Query: 127 VALLLFVVYSNTVSVFQASVAQGRATFMMAWWPVHVVVVLLIV 169
            A+LL++++    +  +++  +G+    +  W V+++ + L +
Sbjct: 301 PAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAI 343


>ECs5238 [R] COG0795 Predicted permeases Ecs Escherichia coli O157:H7
          Length = 366

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 1/163 (0%)

Query: 7   DGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGLLIGNQSQNA 66
           + + SVVVA  G      DG + V +NQG R++G+  L DF+I DF+ Y  +IG+Q+  A
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAV-A 240

Query: 67  AGERSARALQMNELVAKNDGYARGELLWRIALPFMALTLMLLAIPLSFVNPRAGRSLGLL 126
                   + M  L   +   AR EL WRI L F    + L+ +PLS VNPR GR L +L
Sbjct: 241 LDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSML 300

Query: 127 VALLLFVVYSNTVSVFQASVAQGRATFMMAWWPVHVVVVLLIV 169
            A+LL++++    +  +++  +G+    +  W V+++ + L +
Sbjct: 301 PAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAI 343