BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0106.p (276 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0598 [G] COG0395 ABC-type sugar transport system, permease com... 184 2e-46 AGpA79 [G] COG0395 ABC-type sugar transport system, permease com... 166 6e-41 SMb20233 [G] COG0395 ABC-type sugar transport system, permease c... 161 1e-39 Rv2317 [G] COG0395 ABC-type sugar transport system, permease com... 155 7e-38 MT2380 [G] COG0395 ABC-type sugar transport system, permease com... 155 7e-38 >TM0598 [G] COG0395 ABC-type sugar transport system, permease component Tma Thermotoga maritima Length = 277 Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 142/221 (64%), Gaps = 1/221 (0%) Query: 56 LQNFVNAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQ 115 QN+V+AW AAPFPRY+ NTF + T ++V A+LAAYAF+ F G + +F L L Sbjct: 58 FQNYVDAWNAAPFPRYYFNTFFVATTTTLLEVVTASLAAYAFSWMVFPGRDFIFGLFLAT 117 Query: 116 LMVMPDILIVENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVE 175 +M+ ++L+V N+ T++ LG DT ++ +P+ S F IFLLRQ F T+PREL +AA ++ Sbjct: 118 MMIPGEVLLVPNFITISKLGWIDTYYALIIPWIVSVFAIFLLRQHFLTIPRELFDAAKID 177 Query: 176 GASAWQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSST 235 G S W+ L Q+ VPL++P I L+ WN FLW LIVTNS + R L VGLQ FSS Sbjct: 178 GCSHWRFLWQMVVPLSKPAVITSALLKFVGSWNAFLWVLIVTNSEKYRTLPVGLQAFSS- 236 Query: 236 DQGVDWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 D G ++++ AA + P+++ F+ Q+ F+Q R G++ Sbjct: 237 DVGTQYNLLMAAATFSILPVVILFIFTQKYFIQGIARTGLK 277 >AGpA79 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 269 Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 145/260 (55%), Gaps = 5/260 (1%) Query: 20 AWVLALLWLLPLLYALWTAFHPAAFATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFLLV 79 A V LL+L P+LY++W +F + + TL N+ A F RY LN+ ++ Sbjct: 12 ALVAGLLFLSPVLYSIWMSFQ--TVDAYYAGELGFTLDNYARAVGQYNFARYLLNSLIVS 69 Query: 80 TMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDT 139 M+ + AT+AAYAFAR++F+G + +F + LM+ I ++ NY T+ +GL D+ Sbjct: 70 AMVTLLGITFATMAAYAFARYSFKGGDFLFAATVATLMIPSHISLIPNYLTLAKVGLLDS 129 Query: 140 ILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFG 199 + LP ++ F F LRQ + +P+ LDEAA ++GA++ Q+L ++ VPL+RP + Sbjct: 130 YAGLILPAISNGFAAFFLRQYIRGIPKALDEAAYMDGATSLQVLWRIIVPLSRPAIASMA 189 Query: 200 LVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQG---VDWSIITAATLMTSAPLL 256 L T WNN++WPL+ + L +GL + G +DW ++ AA+ +T P+L Sbjct: 190 LYIFMTEWNNYIWPLVAVGKQDMYTLQIGLARLYRINPGEGLIDWPLVMAASTITILPVL 249 Query: 257 LAFLLFQRQFVQSFMRAGIR 276 L FLL +R V+ ++ Sbjct: 250 LGFLLVERHLVRGITMGAVK 269 >SMb20233 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 282 Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 155/277 (55%), Gaps = 9/277 (3%) Query: 7 PFADRH-----RALETVSAWVLALLWLLPLLYALWTAFHPAA--FATRFTLDAPLTLQNF 59 PF R R L V +LA + L PLL+ + AF PAA F++ AP TL NF Sbjct: 8 PFFSRSQVTLVRGLWMVVTAILAFMTLFPLLWIVSIAFKPAAESFSSNLIPQAP-TLDNF 66 Query: 60 VNAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVM 119 + PF RY +N+FL+ + L T+A YA AR F G VMF+ + +V Sbjct: 67 IYVLTGVPFIRYMVNSFLVSATVTVVALFFHTMAGYALARLRFPGREVMFLSIFSTFLVS 126 Query: 120 PDILIVENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASA 179 ++IV + + +G+ ++ + +P +AFGIFLLRQ + ++P+E++EAA ++GA Sbjct: 127 LPVIIVPLFVIVKAMGMLNSYAGLIIPAIFNAFGIFLLRQYYLSLPKEIEEAARIDGAGY 186 Query: 180 WQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGV 239 W+I V +PL+RPI A ++ +WN+FLWPL +T+ + + +G+ F S Sbjct: 187 WRIYWSVILPLSRPIMSALAILFFLANWNSFLWPLTITSDPDLWVVQLGIANFKS-QYSA 245 Query: 240 DWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 W+ + AA+ + + P L+ F++FQRQ + S +G++ Sbjct: 246 SWNYMMAASTIVAIPTLILFVIFQRQIMDSLKTSGLK 282 >Rv2317 [G] COG0395 ABC-type sugar transport system, permease component Mtu Mycobacterium tuberculosis H37Rv Length = 274 Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 149/259 (57%), Gaps = 10/259 (3%) Query: 24 ALLWLLPLLYALWTAF---HPAAFATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFLLVT 80 A++ L P L L T+F H A T L P TL N+ + A F R + T L+ Sbjct: 20 AVITLSPFLLGLLTSFTSAHQFATGTPLQLPRPPTLANYADIADAG-FRRAAVVTALMTA 78 Query: 81 MILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTI 140 +IL QL + LAAYAFAR FRG + +F + + LMV + +V Y M LGLR+T Sbjct: 79 VILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVTVVPLYLMMAQLGLRNTF 138 Query: 141 LSIGLPY-FASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFG 199 ++ LP+ F S + IFLLR+ F+ +P +L AA ++GA+ +++ V +P +RP+ A Sbjct: 139 WALVLPFMFGSPYAIFLLREHFRLIPDDLINAARLDGANTLDVIVHVVIPSSRPVLAALA 198 Query: 200 LVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSS--TDQGVDWSIITAATLMTSAPLLL 257 +++V + WNNF+WPL++T+ + R LTV S DQ W+++ AAT + PL+ Sbjct: 199 MITVVSQWNNFMWPLVITSGHKWRVLTVATADLQSRFNDQ---WTLVMAATTVAIVPLIA 255 Query: 258 AFLLFQRQFVQSFMRAGIR 276 F+ FQR V S + +G++ Sbjct: 256 LFVTFQRHIVASIVVSGLK 274 >MT2380 [G] COG0395 ABC-type sugar transport system, permease component MtC Mycobacterium tuberculosis CDC1551 Length = 274 Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 149/259 (57%), Gaps = 10/259 (3%) Query: 24 ALLWLLPLLYALWTAF---HPAAFATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFLLVT 80 A++ L P L L T+F H A T L P TL N+ + A F R + T L+ Sbjct: 20 AVITLSPFLLGLLTSFTSAHQFATGTPLQLPRPPTLANYADIADAG-FRRAAVVTALMTA 78 Query: 81 MILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTI 140 +IL QL + LAAYAFAR FRG + +F + + LMV + +V Y M LGLR+T Sbjct: 79 VILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVTVVPLYLMMAQLGLRNTF 138 Query: 141 LSIGLPY-FASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFG 199 ++ LP+ F S + IFLLR+ F+ +P +L AA ++GA+ +++ V +P +RP+ A Sbjct: 139 WALVLPFMFGSPYAIFLLREHFRLIPDDLINAARLDGANTLDVIVHVVIPSSRPVLAALA 198 Query: 200 LVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSS--TDQGVDWSIITAATLMTSAPLLL 257 +++V + WNNF+WPL++T+ + R LTV S DQ W+++ AAT + PL+ Sbjct: 199 MITVVSQWNNFMWPLVITSGHKWRVLTVATADLQSRFNDQ---WTLVMAATTVAIVPLIA 255 Query: 258 AFLLFQRQFVQSFMRAGIR 276 F+ FQR V S + +G++ Sbjct: 256 LFVTFQRHIVASIVVSGLK 274