BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0087.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 218 9e-57 AGl1464 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 207 3e-53 AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 202 8e-52 SMc03122 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 197 2e-50 SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 196 4e-50 >PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 218 bits (556), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 121/287 (42%), Positives = 181/287 (63%), Gaps = 4/287 (1%) Query: 1 MXRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLVEYAEQV 60 + RS L+ AAK+LG H+TV+R ++ E +G+QLF ++ GY+LT G L+++AE + Sbjct: 13 LQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPAGQALLKHAEAM 72 Query: 61 ESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITVDMLPMPRFV 120 E+T A EE+ S L GQ+R+G TEG G+ LAP +A P + V+++ +PRFV Sbjct: 73 ENTALLAQEEMSQSISPL-GQIRIGVTEGLGSVFLAPRLAQLMRHYPGLEVELVSVPRFV 131 Query: 121 NLSKHEADISVSIERPLSGNYVVTKL-SDYVLKLYASRDYLAQHPPIHTMDDLAQHHFIG 179 +++ EADI++S++RP S + V+T+L + Y L L+AS YL Q PP+ DDL +H +IG Sbjct: 132 SITNREADIAISLDRP-SADLVITRLLTRYRLALFASPAYLEQAPPLRDRDDLGRHQWIG 190 Query: 180 YIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQQSEELAPV 239 Y+DDL+FS+EL + + FRSTSVVAQ AA AG LAILP F+ + L PV Sbjct: 191 YVDDLLFSQELMFHHSFCRHPQVVFRSTSVVAQQQAAQAGIGLAILPHFMGSRDPLLVPV 250 Query: 240 LPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLMGQS 286 LP++ +I R +W+ E R+ +W +L E + R+ L+G S Sbjct: 251 LPEE-SIQREYWMSTRRELHRSVRLRVVWDFLLELCQREREVLLGPS 296 >AGl1464 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 207 bits (527), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 107/271 (39%), Positives = 160/271 (59%) Query: 1 MXRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLVEYAEQV 60 + R+ L AA+ L H+TVSR + R E + ++LF+RN GY+LT G RLV+ E++ Sbjct: 16 VARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTTVGRRLVDTVERI 75 Query: 61 ESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITVDMLPMPRFV 120 E+ ++ S L G VRL A EGF F + F A +PHI V+M+ + + + Sbjct: 76 EAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAATHPHIMVEMVTIQQIM 135 Query: 121 NLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMDDLAQHHFIGY 180 LS+ EAD++V+++ P +G Y+ ++ DY L +YASR YLA HP I +DL H FIGY Sbjct: 136 ALSRKEADVAVTLDPPKAGPYINEQIIDYTLHIYASRSYLAGHPKITRREDLPNHFFIGY 195 Query: 181 IDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQQSEELAPVL 240 + DL+FS L Y V P F+S+S+ AQ TA +GR L ILP F+A + +L VL Sbjct: 196 VQDLIFSPGLDYMRDVWPGLRPNFQSSSIFAQLTATLSGRGLCILPNFIAARFPDLQMVL 255 Query: 241 PQQIAITRSFWLVASSEQRHVARVSALWSYL 271 P + + R +WL + + +V RV +L ++ Sbjct: 256 PGDVELRRGYWLTSHQDFANVPRVRSLMDFI 286 >AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 202 bits (514), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 167/283 (59%), Gaps = 1/283 (0%) Query: 1 MXRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLVEYAEQV 60 + RS ++ A+K+LG++H+T+SRR+ E+ + +QLF R +G ++T +G R + AE++ Sbjct: 12 VARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEEGQRFLGAAERM 71 Query: 61 ESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITVDMLPMPRFV 120 E+ + A LG ++ ++G VR+GA +G G LAP + AR P + + ++P+PR Sbjct: 72 ETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDLKIQLVPVPRSF 131 Query: 121 NLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMDDLAQHHFIGY 180 +LS+ EADI+++IERP G + +KL+DY L LYAS DYLA H ++ L +H IGY Sbjct: 132 SLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPDDVEALKRHRRIGY 191 Query: 181 IDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQQSEELAPVL 240 ++DL+FS L Y + D AF +S Q A +G + IL ++A Q EL ++ Sbjct: 192 VEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYIAGQYPELMRIM 251 Query: 241 PQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLM 283 P + I+RS+W R + RV + +L+E V R + Sbjct: 252 P-HLGISRSYWTAYHESARQLVRVRTVVDFLQELVAEERRIFI 293 >SMc03122 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 315 Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 161/286 (56%) Query: 1 MXRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLVEYAEQV 60 + R+ L AA++L H+TVSRR+ R E + +LF+RN GY LT G R VE AE++ Sbjct: 16 VARTGQLSTAARRLRTSHATVSRRIDRLEFALKVKLFERNPRGYVLTTMGQRFVETAERM 75 Query: 61 ESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITVDMLPMPRFV 120 E ++ + G VRL EGFG F LA + F R P+I+++++ + + + Sbjct: 76 ERETEQLQLDISDGMTAQRGVVRLSTLEGFGNFFLADRLGEFAERYPNISLELVAIQQIM 135 Query: 121 NLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMDDLAQHHFIGY 180 +LS+ EADI+V++ P +G Y L+ Y L +Y +R YLA PPI T DL H F+GY Sbjct: 136 SLSRKEADIAVALAAPKAGAYHAEVLTPYTLHVYGARSYLAGQPPIRTRSDLGSHRFVGY 195 Query: 181 IDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQQSEELAPVL 240 IDD++F+ L Y + P F+S+S++ Q A G L +LP F+A+ L VL Sbjct: 196 IDDMIFTPGLDYLGEIQPGLRAHFQSSSILTQLKAVRQGLGLCVLPHFMAKDEPNLEIVL 255 Query: 241 PQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLMGQS 286 P +I + R++WL+ + + RV A+ +L + NR + ++ Sbjct: 256 PDEIELKRTYWLICHRDLIAIPRVRAVRDFLVDAAVENRGCFLRET 301 >SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 293 Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 100/275 (36%), Positives = 168/275 (61%), Gaps = 1/275 (0%) Query: 1 MXRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLVEYAEQV 60 + R+ ++ A+K+LGI+H+T+SRR+ EE++ ++L R +G +LTA+G AE++ Sbjct: 12 VARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELTAEGEVFFAAAERM 71 Query: 61 ESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITVDMLPMPRFV 120 E+ + AA ++G ++ ++G VR+GA +GFG LAP + AR P + + ++P+PR Sbjct: 72 ETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPELKLQLVPVPRSF 131 Query: 121 NLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMDDLAQHHFIGY 180 +LS+ EADI+++IERP G V +KL+DY L LYAS +YL ++ T+DDL H IGY Sbjct: 132 SLSQREADIAITIERPEQGRLVSSKLTDYTLGLYASAEYLGRYGTPGTVDDLKNHRRIGY 191 Query: 181 IDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQQSEELAPVL 240 ++DL+F+ L + V +F +S + Q A + + IL ++A+Q EL +L Sbjct: 192 VEDLIFTPSLNFSTEVMRSWDASFEISSAMGQTEAVRSSAGIGILHNYIARQYPELVRLL 251 Query: 241 PQQIAITRSFWLVASSEQRHVARVSALWSYLRECV 275 P + I R++W R + RV + ++L+E V Sbjct: 252 PDR-TIRRAYWTTYHESARDLVRVRTVAAFLQEMV 285