BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0041.p         (54 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1337 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotra...    69   3e-12
jhp0661 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotr...    62   2e-10
STM3106 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotr...    62   5e-10

>PA1337 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Pae Pseudomonas aeruginosa
          Length = 362

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 4   GIVARNGEADDDKLDFVVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 54
           G V RN E  DDK D++V+  LN QKARIL  +A+TKT D+KE+Q++FWEY
Sbjct: 312 GFVLRNAEQPDDKNDWIVAHDLNPQKARILAAVAMTKTQDSKELQRIFWEY 362


>jhp0661 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D jHp Helicobacter pylori J99
          Length = 332

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 1   VGQGIVARNGEADDDKLDFVVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 54
           VG G V  +GE DD    F+ SD LN QKAR+LL LALTKT D  +IQ+MF EY
Sbjct: 280 VGSGGVT-SGEIDDKAYGFITSDNLNPQKARVLLQLALTKTNDKAKIQEMFEEY 332


>STM3106 [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase
           subunit D Sty Salmonella typhimurium LT2
          Length = 348

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 36/54 (66%)

Query: 1   VGQGIVARNGEADDDKLDFVVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 54
           V  G   ++ E DD K  FV S TLN QKAR+LL LALT+T D K+IQ MF +Y
Sbjct: 295 VPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPKQIQTMFNQY 348