BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0034.p         (469 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3079 [R] COG1033 Predicted exporters of the RND superfamily Pa...   287   3e-77

>PA3079 [R] COG1033 Predicted exporters of the RND superfamily Pae
           Pseudomonas aeruginosa
          Length = 793

 Score =  287 bits (735), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 258/476 (54%), Gaps = 24/476 (5%)

Query: 1   VSLVWQFGTLHLLGYGLDPLAVLVPFLVFAIGVSHGVQQINYIVRGIAAGMGCEEAARAS 60
           V+++WQ G L+L+G+GLDP ++LVPFL+FAIG+SHGVQ+IN I    +       AAR +
Sbjct: 276 VAVLWQLGLLNLVGFGLDPYSMLVPFLIFAIGISHGVQKINGIALQSSGADNALMAARLT 335

Query: 61  FRGLLVPGVLALVTAFVSFITLTLIPIPMVKELAITASIGVGYKIITNLVMLPLAASLLK 120
           FR L +PG++A++   V FITL +I I +++ELAI ASIGV   + TNL++LP+A S + 
Sbjct: 336 FRQLFLPGMIAILADAVGFITLLVIDIGVIRELAIGASIGVAVIVFTNLILLPVAISYIG 395

Query: 121 VNKAYADAAMRAQQKRARWLQVFARAAHPRNARVIVVVTLALFAASVWYSSDRLVGTLQA 180
           ++K     +     +   + ++ +  + P+ A V + + L +    +WY     +G L  
Sbjct: 396 ISKKAVQRSKDDAVREHPFWRLLSNFSSPKVAPVSIAIALLMLGGGLWYGKHLKIGDLDQ 455

Query: 181 GAPELRADSRYNLDAKSISDNYDTGLDWLSVILATPENSCDKVAFGRYQEQFDAAMRHVP 240
           GAPELR DSRYNLD   I  NY T  D L V++ T    C         ++    + +  
Sbjct: 456 GAPELRPDSRYNLDNDFIIRNYSTSSDVLVVMVKTSPEGCSTHQALAAMDELAWKLENTE 515

Query: 241 GVMSVSSFAEQMKIYNEGYNEGNPSMYSVPLDPANYAALAVEIGRVRGFLSKDCSMLATH 300
           GV S  S     K   +G NEGN    ++     N   L   I R  G  + DCS+    
Sbjct: 516 GVQSAISMVTVSKQVIKGMNEGNLKWETL---SRNQDVLNNSIARADGLYNTDCSLAPLL 572

Query: 301 LYLTDHKASTINGIIAAVKQYRAAHPLPGLTIRLAAGNAGVIAAVNEEVEKSELPMMLYV 360
           ++L DHKA T++  +AAV+ + A +    L  +LAAGNAG+ AA NE +++SEL +++ V
Sbjct: 573 VFLNDHKAETLDRAVAAVQAFAAENDKDDLQFQLAAGNAGIEAATNEVIKQSELIILVLV 632

Query: 361 YAAIIVLVFAVYRDLRAVVACCLPL---------------------TVATFXLAVGIGVD 399
           Y  +  +    +R   A +   LPL                     T+    L VGIGVD
Sbjct: 633 YICVAAMCMITFRSFAATLCIVLPLILTSVLGNALMAALGIGVKVATLPVIALGVGIGVD 692

Query: 400 YAFYIYSRLQMHLAAGEAIAVALEKSIQEIGVATIFTAITLAIGVATWSFSQLKXR 455
           Y  YIY+RL+  L  G  +  A  ++++  G A +FT + LAIGVATW FS +K +
Sbjct: 693 YGIYIYTRLESFLRMGLPLQEAYYETLRSTGKAVLFTGLCLAIGVATWIFSAIKFQ 748