BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0155.p (347 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0129 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 235 9e-62 BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 228 1e-59 L83296 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 227 4e-59 BS_rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 226 4e-59 PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 226 5e-59 >VCA0129 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Vch Vibrio cholerae Length = 332 Score = 235 bits (600), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 145/332 (43%), Positives = 210/332 (63%), Gaps = 13/332 (3%) Query: 11 ASTTMANTASAQGLRARLFNPAARQKLLAFASLLLMILFFSFASPNFMEVDNLVSILQST 70 ++ TM NT S R +L + + + +LL +++ SF +PNF VDNL++IL+ T Sbjct: 8 STRTMTNTTSDN--RKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQT 65 Query: 71 AVNGVLAIACTYVIITSGIDLSVGTMMTFCAVMAGVVLTNWGMPLPLGIAAAIFFGALSG 130 +VN ++A+ T VI+T+GIDLSVG+++ C A L +P+ + + A+ GA G Sbjct: 66 SVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAAT-LVAMEVPVLVAVPTALLAGAALG 124 Query: 131 WISGMVIAKLKVPPFIATLGMMMLLKGLSLVISGTRPIY--FNDT-EGFSAIAQDSLIGD 187 ISG++IAK KV FIATL M LL+G+++V + RPI F DT + F+ +G Sbjct: 125 AISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLG- 183 Query: 188 LIPSLPIPNAVLILFLVAIGASIILNKTVFGRYTFALGSNEEALRLSGVKVDFWKVAVYT 247 +P+P V ++ +V GA +LN T FGRY +A+G NE A RLSG+ VD K+ VY Sbjct: 184 ----IPVP--VWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYA 237 Query: 248 FSGAICGIAGLIIASRLNSAQPALGQGYELDAIAAVVIGGTSLSGGTGTILGTIIGAFIM 307 G + +AG+I+ SRL+SAQP G GYELDAIAAVV+GGTSL GG G I+GT+IGA I+ Sbjct: 238 ICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALII 297 Query: 308 SVLVNGLRIMSVAQEWQTVVTGVIIILAVYLD 339 L N L ++ V+ +Q + V+I+LAV +D Sbjct: 298 GFLNNALNLLDVSSYYQMIAKAVVILLAVLVD 329 >BH3731 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bha Bacillus halodurans Length = 314 Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/309 (43%), Positives = 199/309 (64%), Gaps = 12/309 (3%) Query: 40 FASLLLMILFFSFASPNFMEVDNLVSILQSTAVNGVLAIACTYVIITSGIDLSVGTMMTF 99 F L ++L SF +P+F+ + N++++L+ ++N ++A T+VI+T GIDLSVG ++ Sbjct: 17 FIGLFFIVLIISFLNPDFLSLSNIMNVLRQVSINALIAFGMTFVILTGGIDLSVGAILAL 76 Query: 100 CAVMAGVVLTNWGMPLPLGIAAAIFFGALSGWISGMVIAKLKVPPFIATLGMMMLLKGLS 159 + + ++ N P+ L + + G L G I+G+VI+K KV PFIATL M + +GL+ Sbjct: 77 SSAVTAWLMVNSVDPI-LAVLIGLLAGTLFGAINGLVISKGKVAPFIATLATMTIYRGLT 135 Query: 160 LVISGTRPIY-FNDTEGFSAIAQDSLIGDLIPSLPIPNAVLILFLVAIGASIILNKTVFG 218 LV + RPI F + F + + G +P++ + + +IL+L IL KT FG Sbjct: 136 LVFTDGRPISGFESSTMFEMLGRGYFFGIPVPAVTMIISFIILYL-------ILKKTTFG 188 Query: 219 RYTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICGIAGLIIASRLNSAQPALGQGYELD 278 R +A+G N+EA LSG+KVD K+ VY+ +G + +AG+I+ SRL SAQP G YELD Sbjct: 189 RRVYAVGGNQEAAILSGIKVDRIKIYVYSLTGFLSALAGMILTSRLYSAQPTAGSMYELD 248 Query: 279 AIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGLRIMSVAQEWQTVVTGVIIILAVYL 338 AIAAVV+GGTSL+GG G I+GT+IGA I+ VL NGL ++ V+ +Q VV G +I+LAV L Sbjct: 249 AIAAVVLGGTSLTGGRGWIVGTLIGALIIGVLNNGLNLLGVSSFFQQVVKGSVILLAVLL 308 Query: 339 DILRRRRRA 347 D RR+ A Sbjct: 309 D---RRKSA 314 >L83296 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Lla Lactococcus lactis Length = 313 Score = 227 bits (578), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 137/307 (44%), Positives = 202/307 (65%), Gaps = 11/307 (3%) Query: 42 SLLLMILFFSFASPNFMEVDNLVSILQSTAVNGVLAIACTYVIITSGIDLSVGTMMTFC- 100 +L+++++ + +PNFM +NL+++L NG +A T+VI+TSGIDLSVG ++ Sbjct: 16 ALIVLMIIITCINPNFMTANNLLNLLLQVTANGFIAFGMTFVILTSGIDLSVGAILALSS 75 Query: 101 AVMAGVVLTNWGMPLPLGIAAAIFFGALSGWISGMVIAKLKVPPFIATLGMMMLLKGLSL 160 AV AG + GMPLPL + A+ GA G I+G +IA K+ PFI TL M+ +G +L Sbjct: 76 AVSAGFI--AQGMPLPLAVVCALIIGAFLGAINGALIAYGKLAPFIVTLATQMVYRGATL 133 Query: 161 VISGTRPIYFN-DTEGFSAIAQDSLIGDLIPSLPIPNAVLILFLVAIGASIILNKTVFGR 219 V + PI + D + I Q L+G IP V+++ LV I I+L+KT FG+ Sbjct: 134 VFTDGNPITKHMDGYFLAYIGQGYLLG-------IPFPVILMILVFIVLWILLHKTAFGK 186 Query: 220 YTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICGIAGLIIASRLNSAQPALGQGYELDA 279 +ALG NE+A +SG+K++ K+A+YT SGA+ I+GLII+SRL+SA P G GYE+ A Sbjct: 187 SVYALGGNEKAAYISGIKLNKVKIAIYTLSGAMSAISGLIISSRLSSATPQAGSGYEMYA 246 Query: 280 IAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGLRIMSVAQEWQTVVTGVIIILAVYLD 339 IAAVV+GGTSL GG G + GT+IG I+ VL NGL I+ V+ WQ V+ G++I++AV +D Sbjct: 247 IAAVVLGGTSLMGGKGRMFGTMIGVLIIGVLNNGLNIIGVSAFWQQVIQGLVILVAVLID 306 Query: 340 ILRRRRR 346 ++R +R+ Sbjct: 307 VIRSKRK 313 >BS_rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bsu Bacillus subtilis Length = 322 Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 135/333 (40%), Positives = 210/333 (63%), Gaps = 14/333 (4%) Query: 17 NTASAQGLRARLFNPAARQKLLAFASLLLMILFFSFASPNFMEVDNLVSILQSTAVNGVL 76 T Q + R+ QKL F L ++++ S +P+F+E N++++L+ A+NG++ Sbjct: 2 KTEQLQTEQKRIHFDGVMQKLGPFLGLFILVIIVSILNPSFLEPLNILNLLRQVAINGLI 61 Query: 77 AIACTYVIITSGIDLSVGTMMTFC-AVMAGVVLTNWGMPLPLGIAAAIFFGALSGWISGM 135 A T+VI+T GIDLSVG ++ A++AG++++ G+ L I GA+ G I+G+ Sbjct: 62 AFGMTFVILTGGIDLSVGAILALSSALVAGMIVS--GVDPVLAIILGCIIGAVLGMINGL 119 Query: 136 VIAKLKVPPFIATLGMMMLLKGLSLVISGTRPIY-FNDTEGFSAIAQDSLIGDLIPSLPI 194 +I K K+ PFIATL M + +GL+LV + PI GF + +G +P++ + Sbjct: 120 LITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYGFQMFGRGYFLGIPVPAITM 179 Query: 195 PNAVLILFLVAIGASIILNKTVFGRYTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICG 254 A +IL+ ++L+KT FGR T+A+G NE+A +SG+KV KV +Y+ +G + Sbjct: 180 VLAFVILW-------VLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSA 232 Query: 255 IAGLIIASRLNSAQPALGQGYELDAIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGL 314 +AG I+ SRL+SAQP G+ YELDAIAAVV+GGTSLSGG G I+GT+IG I+ L NGL Sbjct: 233 LAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTLIGVLIIGTLNNGL 292 Query: 315 RIMSVAQEWQTVVTGVIIILAVYLDILRRRRRA 347 ++ V+ +Q VV G++I++AV LD R++ A Sbjct: 293 NLLGVSSFYQLVVKGIVILIAVLLD---RKKSA 322 >PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Pmu Pasteurella multocida Length = 347 Score = 226 bits (577), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 136/308 (44%), Positives = 194/308 (62%), Gaps = 20/308 (6%) Query: 51 SFASPNFMEVDNLVSILQSTAVNGVLAIACTYVIITSGIDLSVGTMMTFCAVMAGVVLTN 110 S +S F+ +N+++IL ++ V+++ TYVI+T GIDLSVG+++ AV GV T+ Sbjct: 30 SLSSDVFLSTNNIINILLQVSIICVISVGMTYVILTGGIDLSVGSIVALSAVCLGV-FTH 88 Query: 111 WGMP--------------LPLGIAAAIFFGALSGWISGMVIAKLKVPPFIATLGMMMLLK 156 WGM + I A IF G L G+++G+VI KV PFI TLGMM + + Sbjct: 89 WGMDWLGENPSSFSVLMIVISAIIATIFVGILCGYVNGLVIVYGKVTPFITTLGMMGIAR 148 Query: 157 GLSLVISGTRPIY-FNDTEGFSAIAQDSLIGDLIPSLPIPNAVLILFLVAIGASIILNKT 215 GL+L IS + IY F DT F + +L +LP+P V+I LV + + +L +T Sbjct: 149 GLALTISDGKTIYNFPDTLRFLGNGRIALTETF--ALPVP--VIIALLVVLVSFYVLTQT 204 Query: 216 VFGRYTFALGSNEEALRLSGVKVDFWKVAVYTFSGAICGIAGLIIASRLNSAQPALGQGY 275 +FGR +ALG N EA+RLSG+ ++ ++ Y +GA+ I +I+ RLN+AQP G GY Sbjct: 205 MFGRQIYALGGNREAVRLSGINIEKLEIKAYVINGALAAIGAIILVGRLNAAQPIAGNGY 264 Query: 276 ELDAIAAVVIGGTSLSGGTGTILGTIIGAFIMSVLVNGLRIMSVAQEWQTVVTGVIIILA 335 ELDAIAA VIGGTSL GG G+++ T IGA IM VL NGL +++V Q ++ G++IILA Sbjct: 265 ELDAIAATVIGGTSLMGGVGSVVSTSIGALIMGVLQNGLTLLNVTSYLQRLIIGLVIILA 324 Query: 336 VYLDILRR 343 V+LD LRR Sbjct: 325 VFLDQLRR 332