BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0048.0148.p         (223 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc5098 [MR] COG4948 L-alanine-DL-glutamate epimerase and relate...   244   1e-64
BMEI1707 [MR] COG4948 L-alanine-DL-glutamate epimerase and relat...   238   8e-63
YPO1567 [MR] COG4948 L-alanine-DL-glutamate epimerase and relate...   213   3e-55
SMb21113 [MR] COG4948 L-alanine-DL-glutamate epimerase and relat...   192   7e-49

>AGc5098 [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes
           of enolase superfamily Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 425

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/143 (79%), Positives = 125/143 (87%)

Query: 1   MTKITALRVLDVRFPTSQSLDGSDAMNPDPDYSAAYVILDTDNAALKGHGLTFTIGRGNE 60
           MTKIT LRV D+RFPTSQSLDGSDAMNPDPDYSAAYVILDTD   LKGHGLTFTIGRGN+
Sbjct: 1   MTKITDLRVFDLRFPTSQSLDGSDAMNPDPDYSAAYVILDTDEPRLKGHGLTFTIGRGND 60

Query: 61  ICCAAIRAMEHLVVGLELEWIAADMGRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAW 120
           ICC AI AM HLVVG +L  +  + G++WRH+TSDSQLRWIGPDKGA+HLATGAVVNA W
Sbjct: 61  ICCMAIEAMRHLVVGTDLATVTENPGKYWRHLTSDSQLRWIGPDKGAMHLATGAVVNAVW 120

Query: 121 DLWAKAEGKPVWKLVADMSPEEL 143
           DL AK  GKPVW+LVADMSPEE+
Sbjct: 121 DLLAKKAGKPVWQLVADMSPEEI 143


>BMEI1707 [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes
           of enolase superfamily Bme Brucella melitensis
          Length = 425

 Score =  238 bits (607), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/143 (78%), Positives = 125/143 (87%)

Query: 1   MTKITALRVLDVRFPTSQSLDGSDAMNPDPDYSAAYVILDTDNAALKGHGLTFTIGRGNE 60
           MTKIT LRV D+RFPTSQSLDGSDAMNPDPDYSAAYVILDTD+ ALKGHGLTFTIGRGN+
Sbjct: 1   MTKITDLRVFDLRFPTSQSLDGSDAMNPDPDYSAAYVILDTDDEALKGHGLTFTIGRGND 60

Query: 61  ICCAAIRAMEHLVVGLELEWIAADMGRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAW 120
           ICC AI AM HLVVG  L+ I A  G+FW H+T DSQLRWIGP+KGA+HLATGAVVNA W
Sbjct: 61  ICCHAILAMRHLVVGASLDEIRAAPGKFWHHLTGDSQLRWIGPEKGAMHLATGAVVNAIW 120

Query: 121 DLWAKAEGKPVWKLVADMSPEEL 143
           DL AK  GKPVW+LV+++SPEE+
Sbjct: 121 DLLAKQAGKPVWRLVSELSPEEI 143


>YPO1567 [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes
           of enolase superfamily Ype Yersinia pestis
          Length = 400

 Score =  213 bits (542), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/119 (81%), Positives = 108/119 (90%)

Query: 26  MNPDPDYSAAYVILDTDNAALKGHGLTFTIGRGNEICCAAIRAMEHLVVGLELEWIAADM 85
           MNPDPDYSAAYVILDTDN AL GHGLTFTIGRGNEICC AI A+EHL+VG +L  + A+M
Sbjct: 1   MNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANM 60

Query: 86  GRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAWDLWAKAEGKPVWKLVADMSPEELV 144
           G+FWR  TSDSQLRWIGP+KGAIHLATGAV+NA WDLW+KAEGKP+W+LVADMSPEELV
Sbjct: 61  GKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELV 119


>SMb21113 [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes
           of enolase superfamily Sme Sinorhizobium meliloti
          Length = 400

 Score =  192 bits (487), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 98/118 (83%)

Query: 26  MNPDPDYSAAYVILDTDNAALKGHGLTFTIGRGNEICCAAIRAMEHLVVGLELEWIAADM 85
           MNPDPDYSAAYVILDTD   L GHGLTFTIGRGN+ICC AI AM HLVVG ++  I    
Sbjct: 1   MNPDPDYSAAYVILDTDRPGLAGHGLTFTIGRGNDICCMAIEAMRHLVVGQDISNILKHP 60

Query: 86  GRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAWDLWAKAEGKPVWKLVADMSPEEL 143
           GRFWRH+TSDSQLRWIGP+KGAIHLATGA+VNA WDL AK  GKPVW+LVADM  EE+
Sbjct: 61  GRFWRHLTSDSQLRWIGPEKGAIHLATGAIVNAVWDLLAKHAGKPVWRLVADMPAEEI 118