BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0136.p (357 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc4267 [G] COG4213 ABC-type xylose transport system, periplasmi... 550 e-156 SMb20895 [G] COG4213 ABC-type xylose transport system, periplasm... 518 e-146 BH3442 [G] COG4213 ABC-type xylose transport system, periplasmic... 448 e-126 mll5659 [G] COG4213 ABC-type xylose transport system, periplasmi... 416 e-116 BMEII0360 [G] COG4213 ABC-type xylose transport system, periplas... 357 3e-98 >AGc4267 [G] COG4213 ABC-type xylose transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 354 Score = 550 bits (1417), Expect = e-156, Method: Compositional matrix adjust. Identities = 275/355 (77%), Positives = 310/355 (87%), Gaps = 1/355 (0%) Query: 3 IKSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKGYQ 62 +KS++S +A + S +A AQ K VG+AMPTKSSARWI DGNN+VK L+E GY+ Sbjct: 1 MKSIISLMA-ACAIGAASFAAPAFAQDKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYK 59 Query: 63 TDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIR 122 TDLQYA+DDIPNQLSQIENM+TKG KVLVIA+IDGTTL+DVL++A ++G+KVIAYDRLIR Sbjct: 60 TDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIR 119 Query: 123 GSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMS 182 S +V YYATFDNFQVGVLQA S+ LGLK+GKGPFNIELFGGS DDNNAFFFY+GAMS Sbjct: 120 NSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMS 179 Query: 183 VLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAYYTNAKVNAVLSPYDGL 242 VLKPYIDSGKLVV+S QMGMDKV TLRWDPATAQARMDNLLSAYYT+AKV+AVLSPYDGL Sbjct: 180 VLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGL 239 Query: 243 SIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMV 302 SIGI+SSL+GVGYGT QP P VSGQDAEVPSVKSII GEQYSTIFKDTRELAKVTV MV Sbjct: 240 SIGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAGEQYSTIFKDTRELAKVTVNMV 299 Query: 303 DAVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEVLVGSGYYTEAQLK 357 +AV+ GK+P++NDTKTY NGVKVVPSYLLKPV V K N+K+VLV GYY E QLK Sbjct: 300 NAVMEGKEPEVNDTKTYENGVKVVPSYLLKPVAVTKENYKQVLVDGGYYKEDQLK 354 >SMb20895 [G] COG4213 ABC-type xylose transport system, periplasmic component Sme Sinorhizobium meliloti Length = 355 Score = 518 bits (1333), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/341 (73%), Positives = 291/341 (85%) Query: 16 VTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKGYQTDLQYAEDDIPNQ 75 +T+ +A AQ K +VG++MPTK+S RWI+DG M K+ KE GY DLQ+A+DDIPNQ Sbjct: 13 ITVAGFAAPAVAQEKGMVGISMPTKTSTRWISDGETMEKLFKEAGYTPDLQFADDDIPNQ 72 Query: 76 LSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIRGSKNVDYYATFDN 135 L+QIENM+TKGAKVLVI AIDGTTL+D+LQKAAD GVKVIAYDRLIR S NVDYYATFDN Sbjct: 73 LAQIENMVTKGAKVLVIGAIDGTTLSDILQKAADAGVKVIAYDRLIRDSGNVDYYATFDN 132 Query: 136 FQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSGKLVV 195 FQVGVLQA SL + L L P N+ELFGGS DDNNAFFFY+GAMSVL+P IDSGK+VV Sbjct: 133 FQVGVLQATSLVEGLKLDSATEPKNVELFGGSPDDNNAFFFYDGAMSVLQPLIDSGKIVV 192 Query: 196 RSKQMGMDKVATLRWDPATAQARMDNLLSAYYTNAKVNAVLSPYDGLSIGILSSLRGVGY 255 +S QMGMD+V TLRWD A AQARM+NLLS+ YT+AKV+ VLSPYDGLSIGI+S+L+GVGY Sbjct: 193 KSGQMGMDQVGTLRWDGAVAQARMENLLSSAYTDAKVDGVLSPYDGLSIGIISALKGVGY 252 Query: 256 GTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVDAVLGGKQPQIND 315 G+ P P V+GQDAE+PSVKSI+ GEQYST+FKDTRELAKVTV MV+A++ GK+P++ND Sbjct: 253 GSGDMPMPIVTGQDAELPSVKSILAGEQYSTVFKDTRELAKVTVNMVNAIMDGKEPEVND 312 Query: 316 TKTYNNGVKVVPSYLLKPVVVDKSNWKEVLVGSGYYTEAQL 356 TKTY NGVKVVPSYLLKPV VDKSN K+VLVGSGYYTE QL Sbjct: 313 TKTYENGVKVVPSYLLKPVSVDKSNAKDVLVGSGYYTEDQL 353 >BH3442 [G] COG4213 ABC-type xylose transport system, periplasmic component Bha Bacillus halodurans Length = 359 Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust. Identities = 213/325 (65%), Positives = 265/325 (81%) Query: 33 VGVAMPTKSSARWIADGNNMVKVLKEKGYQTDLQYAEDDIPNQLSQIENMLTKGAKVLVI 92 VG++MPT+SS RWIADGNNMV+ + GY+T+LQY ED I NQ+ QIENM+T+G LVI Sbjct: 34 VGISMPTQSSERWIADGNNMVEQFEALGYETNLQYGEDVIENQIDQIENMITRGVDALVI 93 Query: 93 AAIDGTTLTDVLQKAADKGVKVIAYDRLIRGSKNVDYYATFDNFQVGVLQAQSLEKALGL 152 AAIDG +LT+VL+ A + VI+YDRLIR S++V YYATFDN+QVGVL+ + +E LGL Sbjct: 94 AAIDGESLTEVLELAHSMEIPVISYDRLIRNSEHVSYYATFDNYQVGVLKGEYIEGYLGL 153 Query: 153 KEGKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSGKLVVRSKQMGMDKVATLRWDP 212 EG+GPFNIELF GS DDNNA+FF++GAMSVL+PYID+G+LVV+S Q +VATLRWD Sbjct: 154 DEGEGPFNIELFAGSPDDNNAYFFFDGAMSVLQPYIDNGQLVVQSGQTDFQQVATLRWDG 213 Query: 213 ATAQARMDNLLSAYYTNAKVNAVLSPYDGLSIGILSSLRGVGYGTPQQPFPYVSGQDAEV 272 + AQ RMDNLLS +YT+ ++AVLSPYDG+SIGI+SSL+GVGYG+ P P V+GQDAE Sbjct: 214 SLAQERMDNLLSGFYTDKTLDAVLSPYDGISIGIISSLKGVGYGSGDLPMPVVTGQDAER 273 Query: 273 PSVKSIIRGEQYSTIFKDTRELAKVTVGMVDAVLGGKQPQINDTKTYNNGVKVVPSYLLK 332 PS+ SII GEQ TIFKDTRELA V MVDAVL G++P++NDT+TY NGVKVVPSYLL+ Sbjct: 274 PSIASIIAGEQTQTIFKDTRELAGKAVEMVDAVLKGEEPEVNDTETYENGVKVVPSYLLE 333 Query: 333 PVVVDKSNWKEVLVGSGYYTEAQLK 357 P+ VD +N+KEVLVGSGYY E+ + Sbjct: 334 PISVDINNYKEVLVGSGYYDESDFE 358 >mll5659 [G] COG4213 ABC-type xylose transport system, periplasmic component Mlo Mesorhizobium loti Length = 356 Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust. Identities = 226/343 (65%), Positives = 264/343 (76%), Gaps = 8/343 (2%) Query: 19 MSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKGYQTDLQYAEDDIPNQLSQ 78 M+ SA A K LVGV MPTK+S RWI DG+ + L+ GY DLQYA+DDIPNQLSQ Sbjct: 18 MTYSAH--AADKGLVGVLMPTKTSQRWINDGDAVKSQLEALGYTVDLQYAQDDIPNQLSQ 75 Query: 79 IENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRLIRGSKNVDYYATFDNFQV 138 +EN +TKG K L+IA+IDGTTL+D LQKAAD GV V+AYDRLI+ + NVDYY TFDNF V Sbjct: 76 LENEITKGPKALIIASIDGTTLSDALQKAADAGVVVVAYDRLIKKTANVDYYTTFDNFGV 135 Query: 139 GVLQAQSLEKALGLKE---GKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSGKLVV 195 GV+QA SL K GLKE P+N+ELFGGS DDNNAFFFYNGA+SVL+P ID G + + Sbjct: 136 GVIQANSLVK--GLKERFPNTKPWNVELFGGSPDDNNAFFFYNGAISVLQPLIDDGSIKI 193 Query: 196 RSKQMGMDKVATLRWDPATAQARMDNLLSAYYTN-AKVNAVLSPYDGLSIGILSSLRGVG 254 +S QMGMDKV TLRW ATAQARMDNLLSA Y++ ++V+ VLSPYDGLS GI +SLR VG Sbjct: 194 KSGQMGMDKVGTLRWLAATAQARMDNLLSANYSDGSRVDGVLSPYDGLSRGITASLRAVG 253 Query: 255 YGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVDAVLGGKQPQIN 314 YGT QP+P V+GQDAE SVK II GEQYST+FKDTRELAK TV +VD VL G +P Sbjct: 254 YGTAAQPWPVVTGQDAETASVKLIISGEQYSTVFKDTRELAKSTVELVDKVLSGGKPDGL 313 Query: 315 DTKTYNNGVKVVPSYLLKPVVVDKSNWKEVLVGSGYYTEAQLK 357 DTKTYNN VKVVPS LL P VDKSN+++++V SGY LK Sbjct: 314 DTKTYNNDVKVVPSILLTPHEVDKSNYQKLVVDSGYIKAEDLK 356 >BMEII0360 [G] COG4213 ABC-type xylose transport system, periplasmic component Bme Brucella melitensis Length = 218 Score = 357 bits (916), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 173/218 (79%), Positives = 196/218 (89%) Query: 140 VLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGAMSVLKPYIDSGKLVVRSKQ 199 +LQAQS+EKAL LK GPFNIELFGGS DDNNA+FFYNGAMSVL+PYIDSGKLVV S Q Sbjct: 1 MLQAQSIEKALDLKNKPGPFNIELFGGSPDDNNAYFFYNGAMSVLQPYIDSGKLVVGSGQ 60 Query: 200 MGMDKVATLRWDPATAQARMDNLLSAYYTNAKVNAVLSPYDGLSIGILSSLRGVGYGTPQ 259 GMDKVATLRWD ATAQARMD++LSAYY++ K++AVLSPYDG+SIGILSSL+GVGYG+ Sbjct: 61 TGMDKVATLRWDGATAQARMDSILSAYYSDKKLDAVLSPYDGISIGILSSLKGVGYGSGD 120 Query: 260 QPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVGMVDAVLGGKQPQINDTKTY 319 P P VSGQDAE+PSVKSI+ GEQ STIFKDTRELAKVTV MVDA++ GK+P++NDTKTY Sbjct: 121 MPMPVVSGQDAEIPSVKSILAGEQNSTIFKDTRELAKVTVDMVDALMTGKEPEVNDTKTY 180 Query: 320 NNGVKVVPSYLLKPVVVDKSNWKEVLVGSGYYTEAQLK 357 NNGVKVVPSYLLKPV+VDKSNWK+VLV SGYY E Q+K Sbjct: 181 NNGVKVVPSYLLKPVIVDKSNWKQVLVDSGYYKEDQIK 218