BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0135.p (340 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3905 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 277 3e-74 yjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type tr... 267 3e-71 ZyjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t... 266 3e-71 ECs5208 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 266 3e-71 SMb21590 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 261 1e-69 >YPO3905 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 330 Score = 277 bits (708), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 164/301 (54%), Positives = 205/301 (68%), Gaps = 5/301 (1%) Query: 36 YDGFLSPQVMLNLLIDNAFLLVVAIGMTFVILSGGIDLSVGSVLALTTMVAAFLLQNWHW 95 + F S +V +LL DNAFL +VA+GMTFVILSGGIDLSVGSV+A T ++ A L+ + Sbjct: 26 FPSFSSSRVWCDLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVLLAKLIGTYGI 85 Query: 96 HPLLVIVTVLLMGAGFGAAMGAMIHYFKLQAFIVTLAGMFLARGLCYLISINSITIDDPL 155 HP+ VL+MGA FGA MG +I KL AFI+TLAGMF RG+ +++S S+ I+ P+ Sbjct: 86 HPVYAFAIVLVMGAMFGALMGWIIDSLKLPAFIITLAGMFFIRGMSFIVSEESLPINHPI 145 Query: 156 FTTLSQT--RLELAGLFISPSVVIALFMLALAIWMAHCTRFGRAVYAIGGNENSALLMGL 213 + TL+ R+ G F + I L ++A I +AH TRFG VYAIGGN SA LMG+ Sbjct: 146 YETLANYAWRVPGGGRF-TLLAFIMLMVVAFGILLAHHTRFGHNVYAIGGNSVSAGLMGV 204 Query: 214 PVGRTKVLVYAFSGLCAAVAGVLFSFYMLSGYGLHAQGVELDAIAAVVIGGTLLTGGYGY 273 PV RT + +Y S AA++G++FS Y +GY L A GVELDAIAAVVIGGTLL GG G Sbjct: 205 PVRRTTIKIYMLSSTLAALSGIVFSLYTSAGYALAASGVELDAIAAVVIGGTLLAGGIGT 264 Query: 274 VAGTLTGVLILGVIQTLIAFDGTLSSWWTKIFIGALLFVFCVAQRVISLGAL--RGKPAG 331 V GTL GVLI G+IQ+ I FDGTLSSWWTKI IG LLF F V Q+ +S L R +P Sbjct: 265 VFGTLFGVLIQGLIQSYITFDGTLSSWWTKIVIGILLFSFIVIQKAMSAFYLNRRSRPQS 324 Query: 332 S 332 S Sbjct: 325 S 325 >yjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Eco Escherichia coli K12 Length = 323 Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 157/291 (53%), Positives = 193/291 (66%), Gaps = 15/291 (5%) Query: 36 YDGFLSPQVMLNLLIDNAFLLVVAIGMTFVILSGGIDLSVGSVLALTTMVAAFLLQNWHW 95 + GF S +V+ N+L DNAFL ++A+GMTFVILSGGIDLSVGSV+A T + A ++ ++ Sbjct: 18 FPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGL 77 Query: 96 HPLLVIVTVLLMGAGFGAAMGAMIHYFKLQAFIVTLAGMFLARGLCYLISINSITIDDPL 155 PLL VL+MG FGA MG +I K+ AFI+TLAGMF RG+ YL+S SI I+ P+ Sbjct: 78 SPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPI 137 Query: 156 FTTLSQT--------RLELAGLFISPSVVIALFMLALAIWMAHCTRFGRAVYAIGGNENS 207 + TLS RL GL + VVI +F+ AH TRFG VYAIGGN S Sbjct: 138 YDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFL-------AHRTRFGNQVYAIGGNATS 190 Query: 208 ALLMGLPVGRTKVLVYAFSGLCAAVAGVLFSFYMLSGYGLHAQGVELDAIAAVVIGGTLL 267 A LMG+ T + +Y S A +AG++FS Y +GY L GVELDAIA+VVIGGTLL Sbjct: 191 ANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLL 250 Query: 268 TGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIFIGALLFVFCVAQR 318 +GG G V GTL GV I G+IQT I FDGTLSSWWTKI IG LLF+F QR Sbjct: 251 SGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQR 301 >ZyjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 323 Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 157/291 (53%), Positives = 193/291 (66%), Gaps = 15/291 (5%) Query: 36 YDGFLSPQVMLNLLIDNAFLLVVAIGMTFVILSGGIDLSVGSVLALTTMVAAFLLQNWHW 95 + GF S +V+ N+L DNAFL ++A+GMTFVILSGGIDLSVGSV+A T + A ++ ++ Sbjct: 18 FPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGL 77 Query: 96 HPLLVIVTVLLMGAGFGAAMGAMIHYFKLQAFIVTLAGMFLARGLCYLISINSITIDDPL 155 PLL VL+MG FGA MG +I K+ AFI+TLAGMF RG+ YL+S SI I+ P+ Sbjct: 78 SPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPV 137 Query: 156 FTTLSQT--------RLELAGLFISPSVVIALFMLALAIWMAHCTRFGRAVYAIGGNENS 207 + TLS RL GL + VVI +F+ AH TRFG VYAIGGN S Sbjct: 138 YDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFL-------AHRTRFGNQVYAIGGNATS 190 Query: 208 ALLMGLPVGRTKVLVYAFSGLCAAVAGVLFSFYMLSGYGLHAQGVELDAIAAVVIGGTLL 267 A LMG+ T + +Y S A +AG++FS Y +GY L GVELDAIA+VVIGGTLL Sbjct: 191 ANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLL 250 Query: 268 TGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIFIGALLFVFCVAQR 318 +GG G V GTL GV I G+IQT I FDGTLSSWWTKI IG LLF+F QR Sbjct: 251 SGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQR 301 >ECs5208 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ecs Escherichia coli O157:H7 Length = 323 Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 157/291 (53%), Positives = 193/291 (66%), Gaps = 15/291 (5%) Query: 36 YDGFLSPQVMLNLLIDNAFLLVVAIGMTFVILSGGIDLSVGSVLALTTMVAAFLLQNWHW 95 + GF S +V+ N+L DNAFL ++A+GMTFVILSGGIDLSVGSV+A T + A ++ ++ Sbjct: 18 FPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGL 77 Query: 96 HPLLVIVTVLLMGAGFGAAMGAMIHYFKLQAFIVTLAGMFLARGLCYLISINSITIDDPL 155 PLL VL+MG FGA MG +I K+ AFI+TLAGMF RG+ YL+S SI I+ P+ Sbjct: 78 SPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPV 137 Query: 156 FTTLSQT--------RLELAGLFISPSVVIALFMLALAIWMAHCTRFGRAVYAIGGNENS 207 + TLS RL GL + VVI +F+ AH TRFG VYAIGGN S Sbjct: 138 YDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFL-------AHRTRFGNQVYAIGGNATS 190 Query: 208 ALLMGLPVGRTKVLVYAFSGLCAAVAGVLFSFYMLSGYGLHAQGVELDAIAAVVIGGTLL 267 A LMG+ T + +Y S A +AG++FS Y +GY L GVELDAIA+VVIGGTLL Sbjct: 191 ANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLL 250 Query: 268 TGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIFIGALLFVFCVAQR 318 +GG G V GTL GV I G+IQT I FDGTLSSWWTKI IG LLF+F QR Sbjct: 251 SGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQR 301 >SMb21590 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Sme Sinorhizobium meliloti Length = 322 Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/311 (52%), Positives = 213/311 (68%), Gaps = 4/311 (1%) Query: 9 RASHAPWFTSMVTVVLLVVMLVAGAVGYDGFLSPQVMLNLLIDNAFLLVVAIGMTFVILS 68 + + P +++ VL + VA Y LS +V+ NLL DNAFL + A+GMTFVILS Sbjct: 2 KQKYLPLTATILIFVLSYALCVAQ---YPNMLSTRVIGNLLTDNAFLGIAAVGMTFVILS 58 Query: 69 GGIDLSVGSVLALTTMVAAFLLQNWHWHPLLVIVTVLLMGAGFGAAMGAMIHYFKLQAFI 128 GGIDLS+G+V+A + A +L++ HPL+ +L + FGA MGA+IHY ++ AFI Sbjct: 59 GGIDLSIGAVIAFAGVFLAVVLEHGGMHPLVAFALLLAITTLFGALMGAIIHYLEMPAFI 118 Query: 129 VTLAGMFLARGLCYLISINSITIDDPLFTTLSQTRLELAGL-FISPSVVIALFMLALAIW 187 VTLAGMFLARG+ +++SI+SI I P + TL +L G I+ + LF+ A+ I Sbjct: 119 VTLAGMFLARGMAFVLSIDSIPIKHPFYATLKSLYFKLPGGGRITLIGGLMLFVFAVGIL 178 Query: 188 MAHCTRFGRAVYAIGGNENSALLMGLPVGRTKVLVYAFSGLCAAVAGVLFSFYMLSGYGL 247 +AH TRFG +YA+GG +A LMG+PV T + +YA SGL A ++G++FS Y +GY L Sbjct: 179 IAHRTRFGTNIYALGGGTATAKLMGVPVAATTIRIYALSGLLAGLSGIVFSLYTSAGYSL 238 Query: 248 HAQGVELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIFIG 307 A GVELDAI AVVIGGTLLTGG G+VAGTL G+LI G+IQT I FDGTLSSWWTKI IG Sbjct: 239 AAVGVELDAITAVVIGGTLLTGGSGFVAGTLVGILIQGLIQTYITFDGTLSSWWTKILIG 298 Query: 308 ALLFVFCVAQR 318 LLF F + Q+ Sbjct: 299 LLLFAFILLQK 309