BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0134.p (355 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3906 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 292 7e-79 AGl3181 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 280 3e-75 SMb21589 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 263 5e-70 ZytfT [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t... 245 1e-64 ECs5207 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 245 1e-64 >YPO3906 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 339 Score = 292 bits (748), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 170/314 (54%), Positives = 220/314 (70%), Gaps = 13/314 (4%) Query: 31 GALAVLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDIS 90 GALAV+LLID L+ P FF + I+DG L+G++IDI+NR AP+ L ALGMTLVIAT G+D+S Sbjct: 27 GALAVILLIDSLVAPHFFSIHIQDGRLFGSIIDILNRGAPVALLALGMTLVIATGGIDLS 86 Query: 91 VGAVVAISGAVAAILIGGKMVVVDGVSQYVSNVPMVWALCAAMGAALLCGAWNGLLVAGL 150 VGAV+AI+GA AA L + P + L ++ LCG WNG LVA L Sbjct: 87 VGAVMAIAGATAATLTS-------------AGYPFMTVLALSLAVGALCGLWNGFLVAVL 133 Query: 151 GLQPIIATLVLMVAGRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAAAMFVLL 210 +QPI+ATL+LMVAGRG+AQL+T+GQIVT LG L LP S+ IA +M +L+ Sbjct: 134 QIQPIVATLMLMVAGRGIAQLITEGQIVTFDSGGLATLGSSTLMYLPMSVVIACSMLILV 193 Query: 211 ALLMKKTALGLFIESVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSAD 270 LL +KTALGLFIESVGIN ++R AG+ T ++ VY+ C CA +AG+++ ++I+ AD Sbjct: 194 WLLTRKTALGLFIESVGINLRSARNAGVSTRLVLIAVYVICGVCAAVAGIIVTADIRGAD 253 Query: 271 ANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVV 330 ANNAGL LELDAILAV +GG SL GG+F+L+ SVIGALIIQ + I G PE N+V+ Sbjct: 254 ANNAGLWLELDAILAVVIGGASLMGGRFNLLLSVIGALIIQGMNTGILLSGYQPEFNLVL 313 Query: 331 KSIVVFLVCLSQSP 344 K+IVV V + QSP Sbjct: 314 KAIVVLAVLVVQSP 327 >AGl3181 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 348 Score = 280 bits (716), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 158/326 (48%), Positives = 222/326 (68%), Gaps = 13/326 (3%) Query: 30 LGALAVLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDI 89 L AL ++L ++ PGF + +++G LYG+LIDI+ RAAP+ L +GMTLVIAT+G+D+ Sbjct: 16 LAALFIILAAITIISPGFLDVSLQNGRLYGSLIDILVRAAPVALLTIGMTLVIATKGIDL 75 Query: 90 SVGAVVAISGAVAAILIGGKMVVVDGVSQYVSNVPMVWALCAAMGAALLCGAWNGLLVAG 149 S+GAV+AI GAVAA LI ++P V A+ A+G A CG WNG+LVA Sbjct: 76 SIGAVIAICGAVAATLISNG-----------HSIPAVLAVSLAVGIA--CGLWNGVLVAL 122 Query: 150 LGLQPIIATLVLMVAGRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAAAMFVL 209 L +QPIIATL+LMVAGRG+AQL+T+G I+T F +G G G+P + I A ++ Sbjct: 123 LDIQPIIATLILMVAGRGIAQLITEGVILTFNDDGFAAIGSGSFAGVPLPVIIWVAAALV 182 Query: 210 LALLMKKTALGLFIESVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSA 269 + +L++K+ALG IE+ GIN A+ LAG+R L+FFVY CA +AG+++ ++I+ A Sbjct: 183 IGVLVRKSALGFLIEATGINRRAAALAGVRARFLLFFVYAVSGLCAAIAGMIVTADIRGA 242 Query: 270 DANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMV 329 DANNAGL LELDAILAV +GGTSL GG+FS+ S+IGALIIQT+ I G PPE N++ Sbjct: 243 DANNAGLWLELDAILAVVIGGTSLNGGRFSITASLIGALIIQTINTGILVSGFPPEFNLI 302 Query: 330 VKSIVVFLVCLSQSPQFRRMLRMSKS 355 +K+ ++ +V QSP +L ++ Sbjct: 303 IKAGIIMVVLTLQSPAIMAVLGFVRT 328 >SMb21589 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Sme Sinorhizobium meliloti Length = 341 Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 156/316 (49%), Positives = 220/316 (69%), Gaps = 13/316 (4%) Query: 32 ALAVLLLIDFLLVPGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISV 91 ALA +++ ++ PGF L+I++G LYG+++DI+NR AP++L A+GMT+VIAT+G+D+SV Sbjct: 18 ALAAIVVAISIVFPGFLNLQIQNGRLYGSMVDILNRGAPVVLLAIGMTVVIATKGIDLSV 77 Query: 92 GAVVAISGAVAAILIGGKMVVVDGVSQYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLG 151 GAV+AI GAVAA LI S + L A + ++CG WNG+LVA L Sbjct: 78 GAVMAICGAVAASLI-------------TSGHSLAETLLATLAVGIVCGIWNGVLVAVLD 124 Query: 152 LQPIIATLVLMVAGRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAAAMFVLLA 211 +QPIIATLVLMVAGRG+AQL+T+G I+T F+G G GLP L I +L+A Sbjct: 125 IQPIIATLVLMVAGRGIAQLITEGTILTFNDPGLIFIGSGSFAGLPMPLVIWLVFGLLVA 184 Query: 212 LLMKKTALGLFIESVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADA 271 LL+++TALG+ IE++GIN AS L+G+ T L+ Y+ CA +AG++ A++I+ ADA Sbjct: 185 LLVRRTALGMLIEAIGINRQASTLSGVLTPVLLVAAYVLSGLCAAIAGIIAAADIRGADA 244 Query: 272 NNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVK 331 NNAGL LELDAILAV +GGTSL GG+FS+ SV+GA+IIQ + I G PPE N+++K Sbjct: 245 NNAGLWLELDAILAVVVGGTSLLGGRFSIAASVLGAVIIQAINTGILLSGFPPEFNLIIK 304 Query: 332 SIVVFLVCLSQSPQFR 347 + ++ + + QSP+FR Sbjct: 305 AAIIIFILVLQSPRFR 320 >ZytfT [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 341 Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/311 (49%), Positives = 216/311 (69%), Gaps = 13/311 (4%) Query: 45 PGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAI 104 P F+++ ++DG L+G+ IDI+NRAAP+ L A+GMTLVIAT G+D+SVGAV+AI+GA A Sbjct: 40 PHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAA 99 Query: 105 LIGGKMVVVDGVSQYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLVLMVA 164 + V G S +P+V L +A+G +L G WNG+LVA L +QP +ATL+LMVA Sbjct: 100 M------TVAGFS-----LPIV--LLSALGTGILAGLWNGILVAILKIQPFVATLILMVA 146 Query: 165 GRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAAAMFVLLALLMKKTALGLFIE 224 GRG+AQL+T GQI+T + G G L LP + IA +L LL +KTALG+FIE Sbjct: 147 GRGVAQLITSGQIITFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIE 206 Query: 225 SVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAIL 284 +VGIN A++ AG+ T ++ Y+ CA +AG+++A++I+ ADANNAGL LELDAIL Sbjct: 207 AVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAIL 266 Query: 285 AVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSP 344 AV +GG SL GG+F+L+ SV+GALIIQ + I G PPE+N VVK++VV V + QS Sbjct: 267 AVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQ 326 Query: 345 QFRRMLRMSKS 355 +F +++ +S Sbjct: 327 RFISLIKGVRS 337 >ECs5207 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ecs Escherichia coli O157:H7 Length = 341 Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/311 (49%), Positives = 216/311 (69%), Gaps = 13/311 (4%) Query: 45 PGFFKLEIKDGHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAI 104 P F+++ ++DG L+G+ IDI+NRAAP+ L A+GMTLVIAT G+D+SVGAV+AI+GA A Sbjct: 40 PHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAA 99 Query: 105 LIGGKMVVVDGVSQYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLVLMVA 164 + V G S +P+V L +A+G +L G WNG+LVA L +QP +ATL+LMVA Sbjct: 100 M------TVAGFS-----LPIV--LLSALGTGILAGLWNGILVAILKIQPFVATLILMVA 146 Query: 165 GRGLAQLLTDGQIVTVYYKPFFFLGGGYLFGLPFSLYIAAAMFVLLALLMKKTALGLFIE 224 GRG+AQL+T GQI+T + G G L LP + IA +L LL +KTALG+FIE Sbjct: 147 GRGVAQLITSGQIITFNSPDLSWFGSGSLLFLPTPVIIAVLTLILFWLLTRKTALGMFIE 206 Query: 225 SVGINPVASRLAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAIL 284 +VGIN A++ AG+ T ++ Y+ CA +AG+++A++I+ ADANNAGL LELDAIL Sbjct: 207 AVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAIL 266 Query: 285 AVTLGGTSLAGGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSP 344 AV +GG SL GG+F+L+ SV+GALIIQ + I G PPE+N VVK++VV V + QS Sbjct: 267 AVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQ 326 Query: 345 QFRRMLRMSKS 355 +F +++ +S Sbjct: 327 RFISLIKGVRS 337