BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0114.p (343 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb21300 [F] COG0274 Deoxyribose-phosphate aldolase Sme Sinorhiz... 511 e-144 AGl76 [F] COG0274 Deoxyribose-phosphate aldolase Atu Agrobacteri... 410 e-114 mll4784 [F] COG0274 Deoxyribose-phosphate aldolase Mlo Mesorhizo... 386 e-107 VC2350 [F] COG0274 Deoxyribose-phosphate aldolase Vch Vibrio cho... 151 2e-36 YPO0436 [F] COG0274 Deoxyribose-phosphate aldolase Ype Yersinia ... 146 8e-35 >SMb21300 [F] COG0274 Deoxyribose-phosphate aldolase Sme Sinorhizobium meliloti Length = 334 Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust. Identities = 247/323 (76%), Positives = 277/323 (85%) Query: 21 QPDSAPTGHPRNSVQPYDAAAFEHLRINLSAAEKRVATLKGRRSVKKDAQAAWLLKAITC 80 P A PRN D + R+NLSAAE+RV TL GRR+VKKDAQAAWLLKA+TC Sbjct: 12 HPAGAGHNWPRNDGVELDLSWVLDQRVNLSAAERRVQTLPGRRTVKKDAQAAWLLKAVTC 71 Query: 81 IDLTTLSGDDTPQRVRRLCAKAANPLRADLLEALGMQDRGLTTGAVCVYHRFVKTAVDAL 140 IDLTTL+GDDT +RV+RLCAKA P+R D+L+ALGM DRG+TTGA+CVYHRFV TAV+AL Sbjct: 72 IDLTTLNGDDTAERVKRLCAKARQPVRQDILDALGMGDRGITTGAICVYHRFVSTAVEAL 131 Query: 141 EGKDIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNWEALYREM 200 EG IPVAAVSTGFPAGL PH +KL+EI+ASV DGA EIDIVITREHVLTGNW+ALY EM Sbjct: 132 EGSGIPVAAVSTGFPAGLVPHDVKLREIKASVADGAREIDIVITREHVLTGNWQALYDEM 191 Query: 201 RDFRQACGEAHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNATPLVSLV 260 RDFR ACG+AHVKAILATG+LKTLRNVA+AS+VCMMAGADFIKTSTGKE VNAT LV+L Sbjct: 192 RDFRAACGDAHVKAILATGDLKTLRNVARASLVCMMAGADFIKTSTGKEGVNATLLVTLA 251 Query: 261 MLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGHDWLQPDLFRVGASSLLA 320 MLRMIR Y+E TGI+VGYKPAGG++ AKDVL YQ LMKEELG +WL+PDLFRVGASSLLA Sbjct: 252 MLRMIRAYEERTGIKVGYKPAGGISVAKDVLNYQFLMKEELGREWLEPDLFRVGASSLLA 311 Query: 321 DIERQLEHHVTGRYSAFNRHAIG 343 DIERQLEHHV+G YSA NRH IG Sbjct: 312 DIERQLEHHVSGAYSALNRHPIG 334 >AGl76 [F] COG0274 Deoxyribose-phosphate aldolase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 345 Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/328 (62%), Positives = 244/328 (74%), Gaps = 5/328 (1%) Query: 19 VAQPDSA-----PTGHPRNSVQPYDAAAFEHLRINLSAAEKRVATLKGRRSVKKDAQAAW 73 +AQPD PRN+ F+ + +N SA+E+R AT+ RRSVKK+ Q AW Sbjct: 16 MAQPDQKNGQKMSEAFPRNNGTALKPEWFDDVSVNRSASERRAATITTRRSVKKEYQVAW 75 Query: 74 LLKAITCIDLTTLSGDDTPQRVRRLCAKAANPLRADLLEALGMQDRGLTTGAVCVYHRFV 133 +KAITCIDLTTLSGDDTP RVRRLCAKA P+R D+LE LG+ D G+TTGAVCVY V Sbjct: 76 QIKAITCIDLTTLSGDDTPGRVRRLCAKARRPVREDILETLGLADAGITTGAVCVYPTMV 135 Query: 134 KTAVDALEGKDIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNW 193 AV ALEG IPVA+V+TGFP+GL P +L EI +V GA EIDIVITRE VLT NW Sbjct: 136 PHAVKALEGTAIPVASVATGFPSGLTPLPQRLAEIRYAVEQGAKEIDIVITREFVLTQNW 195 Query: 194 EALYREMRDFRQACGEAHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNA 253 ALY E+ R+ACG+AH+KAILATG+L TL NV +ASMV M AG+DFIKTSTGKE VNA Sbjct: 196 TALYDEISAMREACGDAHMKAILATGDLNTLTNVYRASMVAMQAGSDFIKTSTGKEEVNA 255 Query: 254 TPLVSLVMLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGHDWLQPDLFRV 313 T VSL M+R +R Y E+TG VG+KPAGG+ TAKD + + LMKEELG+ WL+PDLFR+ Sbjct: 256 TLPVSLTMVRALRDYGELTGQMVGFKPAGGLKTAKDAVSWLTLMKEELGNRWLEPDLFRI 315 Query: 314 GASSLLADIERQLEHHVTGRYSAFNRHA 341 GASS+L DIERQLEH VTGRYS+ + HA Sbjct: 316 GASSMLGDIERQLEHFVTGRYSSAHHHA 343 >mll4784 [F] COG0274 Deoxyribose-phosphate aldolase Mlo Mesorhizobium loti Length = 348 Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/313 (62%), Positives = 231/313 (73%), Gaps = 1/313 (0%) Query: 31 RNSVQPYDAAAFEHLR-INLSAAEKRVATLKGRRSVKKDAQAAWLLKAITCIDLTTLSGD 89 RN D E +R +N SA E+RVA+L RRS+K D QAAWLL+A+ C+DLTTL+ + Sbjct: 35 RNPGMKLDLGFMESVRSVNRSALERRVASLTKRRSIKADNQAAWLLRAVACMDLTTLNSN 94 Query: 90 DTPQRVRRLCAKAANPLRADLLEALGMQDRGLTTGAVCVYHRFVKTAVDALEGKDIPVAA 149 DT +RVRRLCAKA NP R D++E LG+ + AVCVYH FV TAVDA+ G I VAA Sbjct: 95 DTEERVRRLCAKAINPFRRDIVEGLGIAGETIRPAAVCVYHPFVATAVDAVRGTGIHVAA 154 Query: 150 VSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNWEALYREMRDFRQACGE 209 VST FP GL P + +L+EIEASVRDGA EID+VI R V W LY E+ R ACG+ Sbjct: 155 VSTAFPHGLAPLSTRLQEIEASVRDGADEIDVVIPRGLVFGAKWRELYNEIVSMRAACGD 214 Query: 210 AHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESVNATPLVSLVMLRMIRQYQ 269 AH+K IL TG+L TLRNV ASMV MMAGADFIKTSTGKESVNAT V L M+R IR Y Sbjct: 215 AHLKVILGTGDLATLRNVMLASMVAMMAGADFIKTSTGKESVNATLPVGLAMVRAIRAYF 274 Query: 270 EMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGHDWLQPDLFRVGASSLLADIERQLEHH 329 E TG +G+KPAGG++TAK L++ VLMKEELG WL+P+LFR GASSLL DIERQLEHH Sbjct: 275 EETGYLIGFKPAGGISTAKASLDWLVLMKEELGRPWLEPELFRFGASSLLTDIERQLEHH 334 Query: 330 VTGRYSAFNRHAI 342 +TG YSA +RHA+ Sbjct: 335 LTGHYSANHRHAM 347 >VC2350 [F] COG0274 Deoxyribose-phosphate aldolase Vch Vibrio cholerae Length = 259 Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 134/244 (54%), Gaps = 19/244 (7%) Query: 75 LKAITCIDLTTLSGDDTPQRVRRLCAKAANPLRADLLEALGMQDRGLTTGAVCVYHRFVK 134 L+A+ +DLTTL+ +DT +V +LC A +P+ T A+C+Y RF+ Sbjct: 9 LRALKLMDLTTLNDNDTDAKVIQLCHDAKSPVG--------------NTAAICIYPRFIP 54 Query: 135 TAVDALEGKDIPVA--AVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGN 192 A L + P A T FP G + + + E +A+V GA E+D+V ++ GN Sbjct: 55 IAKKTLREQGTPEIRIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDVVFPYRALIAGN 114 Query: 193 WEALYREMRDFRQACGE-AHVKAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESV 251 + + ++ + ACG+ +K I+ TGELK + KAS +C+ AGADFIKTSTGK V Sbjct: 115 EQVGFDLVKQCKAACGDKVLLKVIIETGELKQEALIKKASQICIEAGADFIKTSTGKVPV 174 Query: 252 NATPLVSLVMLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGHDWLQPDLF 311 NATP + +ML +IR VG+KPAGGV TA+D +Y + E LG DW + Sbjct: 175 NATPEYARMMLEVIRDMG--VAKTVGFKPAGGVRTAEDAQQYLAMADEILGGDWADSRHY 232 Query: 312 RVGA 315 R GA Sbjct: 233 RFGA 236 >YPO0436 [F] COG0274 Deoxyribose-phosphate aldolase Ype Yersinia pestis Length = 265 Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 134/243 (55%), Gaps = 20/243 (8%) Query: 76 KAITCIDLTTLSGDDTPQRVRRLCAKAANPLRADLLEALGMQDRGLTTGAVCVYHRFVKT 135 +A++ +DLTTL+ DDT ++V LC +A +P T A+C+Y RF+ Sbjct: 16 RALSLMDLTTLNDDDTDEKVIALCHQAKSPAG--------------NTAAICIYPRFIPV 61 Query: 136 AVDALEGKDIPVA--AVSTGFPAGLNPHALKLKEIEASVRDGAAEIDIVITREHVLTGNW 193 A AL + P A T FP G + A+ L E A++ GA E+D+V ++ GN Sbjct: 62 ARKALREQGTPEIRIATVTNFPHGNDDVAIALAETRAAIAYGADEVDVVFPYRALMAGND 121 Query: 194 EALYREMRDFRQACGEAHV--KAILATGELKTLRNVAKASMVCMMAGADFIKTSTGKESV 251 + + ++ ++AC A+V K I+ TGELK + +AS + + AGADFIKTSTGK V Sbjct: 122 KIGFELVKTCKEACAAANVLLKVIIETGELKQAHLIRQASEIAIKAGADFIKTSTGKVPV 181 Query: 252 NATPLVSLVMLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKEELGHDWLQPDLF 311 NAT + +M+R IR+ G VG+KPAGGV TA+D ++ L + +G W F Sbjct: 182 NATLESADIMIRTIRELG--VGETVGFKPAGGVRTAEDAAQFLQLADQLMGEGWADARHF 239 Query: 312 RVG 314 R G Sbjct: 240 RFG 242