BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0109.p (282 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20315 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 251 2e-66 YPO1812 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 238 2e-62 AGl81 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t... 179 5e-45 YPO3636 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 144 2e-34 SMb20487 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 132 1e-30 >SMb20315 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Sme Sinorhizobium meliloti Length = 376 Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 155/257 (60%), Positives = 195/257 (75%), Gaps = 6/257 (2%) Query: 21 DLSGIGLANLAGV---VLV---AAPDAAPWTYTLGFIAVALVTGLLGGALNGWLISRGNL 74 DLSGI LANLAGV +LV + D AP ++ F A+AL+ GL GG LNG LI+ L Sbjct: 115 DLSGIALANLAGVGSYLLVRDWVSADEAPLAFSWLFAAMALLIGLAGGLLNGALIAFAGL 174 Query: 75 TPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFVALLLLVG 134 TPI+ TLGTQ+ FTGLAV TNGS++ + ++P+ GN VLGVP+ F +FV + L+G Sbjct: 175 TPIIATLGTQLFFTGLAVAFTNGSAITLGYIEPLDNFGNTPVLGVPMCFTLFVVIAALIG 234 Query: 135 WLMRYSLFGIKLYLLGTNARAARYSGISQNRLRFATYVISGVLASVAGIIIAARTASVKA 194 ++R++ FG KLYL+G+NA+AARY+GI Q R+ TY + GVLAS+AGIIIAART+SVK Sbjct: 235 VVLRFTPFGFKLYLMGSNAKAARYAGIPQRRMLLLTYTVCGVLASIAGIIIAARTSSVKW 294 Query: 195 DYGNSYLLIAILIAVMAGVRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNFFRDCAWG 254 DYG+SY+LIAILI VMAGVRP GGYGR VC+ SA ALQ+LSS FN L+ISNFFRDCAWG Sbjct: 295 DYGSSYVLIAILIVVMAGVRPDGGYGRTVCVVLSATALQMLSSLFNFLDISNFFRDCAWG 354 Query: 255 LLLLCFLASARVSWRDF 271 LLL+ FLA++RV R + Sbjct: 355 LLLIVFLATSRVDLRAY 371 >YPO1812 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 353 Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 132/230 (57%), Positives = 174/230 (75%) Query: 42 APWTYTLGFIAVALVTGLLGGALNGWLISRGNLTPILCTLGTQMIFTGLAVVLTNGSSLR 101 +P +T+ F+ AL+ GL GG +NG LI+ LTPILCTLGTQ+IFTG AVV+++GS ++ Sbjct: 107 SPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVK 166 Query: 102 ISVVDPISAIGNESVLGVPIPFIIFVALLLLVGWLMRYSLFGIKLYLLGTNARAARYSGI 161 I ++P+S IG+ + +P F +F+ L L+G +R+S GI+LYLLGTN +AA+Y GI Sbjct: 167 IGFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGI 226 Query: 162 SQNRLRFATYVISGVLASVAGIIIAARTASVKADYGNSYLLIAILIAVMAGVRPQGGYGR 221 +Q RL Y +SG LA++AGIIIAAR+ S ADYG+SY+LIAILIAVMAGVRP+GGYGR Sbjct: 227 AQQRLLVVIYTLSGTLAAIAGIIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGR 286 Query: 222 MVCLFFSALALQLLSSTFNLLEISNFFRDCAWGLLLLCFLASARVSWRDF 271 M CL SA ALQ LSSTF L++S+FFRDCAWG LLL F+ +R++ DF Sbjct: 287 MGCLLLSATALQFLSSTFTFLDVSSFFRDCAWGALLLFFIIFSRINPLDF 336 >AGl81 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 346 Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 109/261 (41%), Positives = 165/261 (63%), Gaps = 14/261 (5%) Query: 21 DLSGIGLANLAGVV--------LVAAPDAAPWT---YTLGFIAVALVTGLLGGALNGWLI 69 DLS +G+ANLAG++ +V A ++ YT I +A+ GLL G +NG L+ Sbjct: 86 DLSVVGIANLAGIIAGVYFHSTMVQAGQSSTSGVVFYTGLGIVLAMAVGLLAGLINGLLV 145 Query: 70 SRGNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDPISAIGNESVLGVPIPFIIFVAL 129 ++ +TPIL TLGT + GLA+VLT G ++ + D + IGN +LG+ PF++F+ + Sbjct: 146 AKLRITPILATLGTGQVLMGLALVLTGGPAI-VGFPDAWNWIGNGKILGIATPFLLFIGV 204 Query: 130 LLLVGWLMRYSLFGIKLYLLGTNARAARYSGISQNRLRFATYVISGVLASVAGIIIAART 189 + V L+ S GI L L+GTN RAA ++GI ++R+ +Y+++GVLAS+AGII++ RT Sbjct: 205 CITVAILLTRSTLGINLMLIGTNPRAAVFAGIRKDRMMLYSYMLTGVLASLAGIILSGRT 264 Query: 190 ASVKADYGNSYLLIAILIAVMAGVRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNFFR 249 + K+DYG SYLL A+LIAV+ G P GG GR++ + + +AL LLSS F ++ SN Sbjct: 265 NAAKSDYGASYLLQAVLIAVLGGTNPAGGKGRVLGIAIALIALMLLSSGFQMMRFSNHLI 324 Query: 250 DCAWGLLLLCFLASARVSWRD 270 D WG L+ +A +WR+ Sbjct: 325 DFIWGAFLILVIAIN--AWRN 343 >YPO3636 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 317 Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/204 (41%), Positives = 132/204 (64%), Gaps = 7/204 (3%) Query: 62 GALNGWLISRGNLTPILCTLGTQMIFTGLAVVLTNGSSLRISVVDP-ISAIGNESVLGVP 120 G LNG LIS ++PIL TLGT + TGL ++L+NG IS P I IG+ ++G+P Sbjct: 112 GTLNGVLISVIGVSPILATLGTMTLITGLNILLSNGDV--ISGFPPVIQYIGSGDIVGIP 169 Query: 121 IPFIIFVALLLLVG-W-LMRYSLFGIKLYLLGTNARAARYSGISQNRLRFATYVISGVLA 178 + I+F LL+ G W L+ ++ G +YL+G+N +A R+SG++ +R++ A Y++S +L Sbjct: 170 VAMILF--LLVAAGLWVLLEHTTLGRSIYLVGSNEQATRFSGVNTHRVQIAVYILSALLG 227 Query: 179 SVAGIIIAARTASVKADYGNSYLLIAILIAVMAGVRPQGGYGRMVCLFFSALALQLLSST 238 A I++ A+ S KA YG SYLL+ IL +V+ G+ P GG+GR++ L + + LQLL S Sbjct: 228 WGAAILMMAKFNSAKAGYGESYLLVTILASVLGGINPDGGFGRIIGLILALVVLQLLESG 287 Query: 239 FNLLEISNFFRDCAWGLLLLCFLA 262 NLL +S++ WG +L+ F+A Sbjct: 288 LNLLGVSSYLTMALWGGVLILFIA 311 >SMb20487 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Sme Sinorhizobium meliloti Length = 332 Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 28 ANLAGVVLV------AAPDAAPWTYTLGFIAVALVTGLLGGALNGWLISRGNLTPILCTL 81 ANLAG+ L DA + +G + +A++ G G + G +I+ PIL +L Sbjct: 77 ANLAGLTLAWVLKANGGADAGFGIFLVGSL-LAVMVGAASGVVMGLVIAFTRAHPILVSL 135 Query: 82 GTQMIFTGLAVVLTNGSSLRISVVDP-ISAIGNESVLGVPIPFIIFVALLLLVGWLMRYS 140 + GL LT G IS P + IG+ SV G+P+P I+FV +L L+ + Sbjct: 136 SMMIFLRGLGEFLTRGGD--ISGFPPFVGVIGHGSVAGIPVPLIVFVVCVLAWHLLLGRT 193 Query: 141 LFGIKLYLLGTNARAARYSGISQNRLRFATYVISGVLASVAGIIIAARTASVKADYGNSY 200 G Y++G+N A RYSGI+ + Y +SGV+ S+AGII+ AR SV+ +G SY Sbjct: 194 KLGFNTYMIGSNLEATRYSGINTRKAIVLVYTLSGVMCSIAGIIMLARFNSVRIGHGESY 253 Query: 201 LLIAILIAVMAGVRPQGGYGRMVCLFFSALALQLLSSTFNLLEISNFFRDCAWGLLLL 258 LLI +L + GV P GG+GR++ +F + + LQLLSS NL+ + WG+LL+ Sbjct: 254 LLITVLACFLGGVNPFGGFGRVIPVFVALVVLQLLSSGLNLIGANQHLATAVWGILLV 311