BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0048.0097.p         (112 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and...    79   2e-15
CC2530 Non COG                                                         59   3e-09
RSc1043 [PR] COG2146 Ferredoxin subunits of nitrite reductase an...    58   4e-09

>PA4711 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Pae Pseudomonas
           aeruginosa
          Length = 115

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 1   MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPWRRDAYFDG 60
           ++LC  + L E  +RGF  +   +  +F +RR  +   + + CPH G PL W+ D + D 
Sbjct: 10  IHLCPSSHLAEGNSRGFLVD---ERRLFAVRRDGRAYIYLNRCPHRGIPLEWQPDTFLDD 66

Query: 61  TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDG 102
           +   + CA+HGALF   +G C  GPC G+ L A+P R D +G
Sbjct: 67  SASLIRCASHGALFLIESGECVAGPCAGERLRALPCREDAEG 108


>CC2530 Non COG
          Length = 90

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 38/73 (52%)

Query: 28  FVLRRGDQVRAWRDSCPHHGTPLPWRRDAYFDGTGQHLVCAAHGALFDPLTGVCTLGPCQ 87
           FV+RRG+ V  + D CPH G PL    D Y    G  ++C+ HGA+F    G C  GPC 
Sbjct: 12  FVVRRGEAVFGYVDRCPHAGLPLAQELDRYLTPDGDLILCSWHGAVFKVEDGACVGGPCT 71

Query: 88  GDTLTAVPLRIDD 100
           G  L   P+   +
Sbjct: 72  GARLKPWPVEARE 84


>RSc1043 [PR] COG2146 Ferredoxin subunits of nitrite reductase and
           ring-hydroxylating dioxygenases Rso Ralstonia
           solanacearum
          Length = 138

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 17  FDTESAGQAT-IFVLRRGDQVRAWRDSCPHHGTPLPWRRDAYFDGTGQHLVCAAHGALFD 75
           F  E  G+    FV+R    V  + + C H    + W+   +F+ +G +L+CA HGA+++
Sbjct: 28  FPVEVRGRPMGAFVVRYAGGVHGYLNQCAHVPMEMDWQEGQFFESSGLYLMCATHGAIYE 87

Query: 76  PLTGVCTLGPCQGDTLTAV 94
           P TG C  GPC+G  LT +
Sbjct: 88  PDTGRCVGGPCRGAHLTKL 106