BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0067.p (288 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 278 9e-75 SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 149 9e-36 BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella meli... 148 1e-35 RSc3334 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 146 6e-35 AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 145 8e-35 >PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 291 Score = 278 bits (712), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 141/290 (48%), Positives = 200/290 (68%), Gaps = 3/290 (1%) Query: 1 MDWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPA 60 M+WD+ R+FLA+ R TLRGAA L +DQATVGRRLA+LE +LG+ LFLRT +GY+ TPA Sbjct: 1 MNWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPA 60 Query: 61 GEMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHI 120 GE A A++ME+ A +L R+ +G+D RL G VRL+ TD A F++PAL RL EHP I Sbjct: 61 GEAAFELAEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHPDI 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPG 180 RV+L +++ + +L KRE DIA+RTLRP+ PDLI R L ++AS Y+++ G+P PG Sbjct: 121 RVLLDSASAVVDLPKRETDIAIRTLRPENPDLILRKLASWPMGLFASADYLRRNGVPVPG 180 Query: 181 TGLKGHDVVIYQRSVSPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTHV 240 +GHD+V+Y+ + + GE I + +V + V++ +++ L G GL ELP ++ Sbjct: 181 ERFRGHDLVMYEPYWHSQRELTLGGEPIRDGRVVIAVNSNMMVRQALARGLGLCELPLYM 240 Query: 241 GDKASGLVRVWPQRE--TPYDMWLVLHSDLNRTARVRAVADAIIAAYEAA 288 G++ GLVRVWPQRE PY++W+V H DL TARVRAV + ++ A+ A Sbjct: 241 GER-DGLVRVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLVEAFAEA 289 >SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 293 Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 141/278 (50%) Query: 1 MDWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPA 60 M+WD+ R+FLA+ R G + A++ L ++ AT+ RR+ ALE L A+L +R PNG T Sbjct: 1 MNWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELTAE 60 Query: 61 GEMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHI 120 GE+ AAA++ME Q Q+ ID + G VR+ A D FL P L RL +P + Sbjct: 61 GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPEL 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPG 180 ++ L + +L++READIA+ RP+ L++ L +YAS Y+ + G P Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQGRLVSSKLTDYTLGLYASAEYLGRYGTPGTV 180 Query: 181 TGLKGHDVVIYQRSVSPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTHV 240 LK H + Y + S E + + + E+S+ + + +++ G+G L ++ Sbjct: 181 DDLKNHRRIGYVEDLIFTPSLNFSTEVMRSWDASFEISSAMGQTEAVRSSAGIGILHNYI 240 Query: 241 GDKASGLVRVWPQRETPYDMWLVLHSDLNRTARVRAVA 278 + LVR+ P R W H RVR VA Sbjct: 241 ARQYPELVRLLPDRTIRRAYWTTYHESARDLVRVRTVA 278 >BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 308 Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 141/281 (50%) Query: 1 MDWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPA 60 M+WD+ RIFLA+ R G + GAA L L+ TV RRL ALE +L L R NG T A Sbjct: 16 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 75 Query: 61 GEMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHI 120 GE AA++ME + Q+ D + G VR+ A D +FL P L RL Q++P + Sbjct: 76 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 135 Query: 121 RVVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPG 180 + L + +L++READIA+ RPD L+AR L +YA RSY+++ P+ Sbjct: 136 TIQLVPVPRSFSLSRREADIAITVERPDQGRLVARRLVDYTLCLYAHRSYLEENSTPKSP 195 Query: 181 TGLKGHDVVIYQRSVSPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTHV 240 L H ++ Y + S E + + A EVS+ L + ++AG G+G L + + Sbjct: 196 EDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIGILHSFI 255 Query: 241 GDKASGLVRVWPQRETPYDMWLVLHSDLNRTARVRAVADAI 281 LV V P R WL H RV AV+ I Sbjct: 256 ACADPDLVPVLPDRVIHRAYWLAYHESARTLRRVTAVSALI 296 >RSc3334 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 298 Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 1/283 (0%) Query: 3 WDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPAGE 62 W+ R FLA+ R G+L GAA L L Q T GR + ALER+LG LF+RT G PT A Sbjct: 8 WELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGLSPTEAAL 67 Query: 63 MAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHIRV 122 A+ +E + L R E + G VR+ A++V L L L +P + + Sbjct: 68 ALRPYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHAAYPGLIL 127 Query: 123 VLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPGTG 182 L S ++ +L +R+ADIAVR RP L+ARH+ + ++A R Y+++RG P Sbjct: 128 ELVPSNRLEDLLRRDADIAVRMQRPSQGVLVARHIGGIELGVHAHRRYLERRGTPATLDD 187 Query: 183 LKGHDVVIYQRSVSPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTHVGD 242 L GH ++ Y + + + + + + A+ + L L+AGFG+G + Sbjct: 188 LAGHALIGYDKETAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGICQVGLAR 247 Query: 243 KASGLVRVWPQRETP-YDMWLVLHSDLNRTARVRAVADAIIAA 284 + LVR++ P D WL +H DL + R R V +A+ A Sbjct: 248 RDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAG 290 >AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/281 (31%), Positives = 140/281 (49%) Query: 1 MDWDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPA 60 M+WD+ RIFLA+ R G + A++ L L+ AT+ RRL LE++L +LF+R NG T Sbjct: 1 MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE 60 Query: 61 GEMAAAAAQQMEQGAEQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHI 120 G+ AA++ME Q + +D + G VR+ A D FL P L RL +P + Sbjct: 61 GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120 Query: 121 RVVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPG 180 ++ L + +L++READIA+ RP+ L+ L +YAS Y+ G P+ Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPDDV 180 Query: 181 TGLKGHDVVIYQRSVSPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTHV 240 LK H + Y + + S GE + + A E+S+ + +++G G+G L ++ Sbjct: 181 EALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI 240 Query: 241 GDKASGLVRVWPQRETPYDMWLVLHSDLNRTARVRAVADAI 281 + L+R+ P W H + RVR V D + Sbjct: 241 AGQYPELMRIMPHLGISRSYWTAYHESARQLVRVRTVVDFL 281