BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0031.p (321 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport... 452 e-127 mlr5222 Non COG 426 e-119 APE1304 [E] COG4177 ABC-type branched-chain amino acid transport... 150 3e-36 AF0225 [E] COG4177 ABC-type branched-chain amino acid transport ... 106 8e-23 RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport... 105 1e-22 >AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 364 Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust. Identities = 244/308 (79%), Positives = 273/308 (88%) Query: 6 AYGVVPWIASAYLIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSAAFMAVGAFAAYNLN 65 AY VVP++ ++YL +A+L+PFLALSLA VGLNLLTGYAGQ+SLGSAAFMAVGAFAAYN + Sbjct: 27 AYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSAAFMAVGAFAAYNFD 86 Query: 66 LRVAGLPLLVSIVLAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFS 125 LRV GLPL VSIVLAGL+A IG+VFGLPSLRLRGFYLAVSTLAAQFFVQW L KFSW S Sbjct: 87 LRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFSWLS 146 Query: 126 NDNPSGVIDAPPLVVGGLAFDTPAGRYLFALAIVTVLTLLCWRLVQSQTGHHFIAVRDNE 185 N++ SGVIDAP L + G++F+ P GRYLFAL VT LT L +RLV SQTG +FIAVRDNE Sbjct: 147 NESASGVIDAPALSLAGISFEGPVGRYLFALTTVTALTFLAYRLVSSQTGRNFIAVRDNE 206 Query: 186 QAARVIGVPVLRTKLLAFAISSFVIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIG 245 AAR+IGVPVLRTKLLAFAISSF+IGVAGV+W F YLRTVEPAGFNLDRS QILFIVIIG Sbjct: 207 TAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFNLDRSFQILFIVIIG 266 Query: 246 GLATIRGAFFGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQ 305 GLA+IRGAFFGAALIVVFPL+LSRLGSLLLG FDSGVL+M+QRIV+GALII FLI+EP Sbjct: 267 GLASIRGAFFGAALIVVFPLVLSRLGSLLLGDVFDSGVLDMTQRIVIGALIILFLILEPD 326 Query: 306 GLAALWQR 313 GL +LW R Sbjct: 327 GLVSLWDR 334 >mlr5222 Non COG Length = 346 Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust. Identities = 246/318 (77%), Positives = 274/318 (86%) Query: 1 LLLLAAYGVVPWIASAYLIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSAAFMAVGAFA 60 LLL AYG+VP I S+YL +A+L+PFLAL LA VGLN+LTGYAGQ+SLGSAAFMA GAFA Sbjct: 22 LLLAFAYGIVPLIGSSYLFEAILLPFLALGLAGVGLNILTGYAGQVSLGSAAFMAAGAFA 81 Query: 61 AYNLNLRVAGLPLLVSIVLAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVK 120 AYN NLRV GLPL+ SIVLAG+ A AIG+VFGLPSLRL+GFYLAVSTLAAQFFVQW L K Sbjct: 82 AYNFNLRVEGLPLIGSIVLAGIVAAAIGIVFGLPSLRLKGFYLAVSTLAAQFFVQWALTK 141 Query: 121 FSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRYLFALAIVTVLTLLCWRLVQSQTGHHFIA 180 FSWFSN++ SGVIDAP L +GGLA D GRYLFAL V +LT L RLV SQTG +FIA Sbjct: 142 FSWFSNNSASGVIDAPRLSIGGLALDGAVGRYLFALTTVALLTFLAHRLVTSQTGRNFIA 201 Query: 181 VRDNEQAARVIGVPVLRTKLLAFAISSFVIGVAGVLWGFVYLRTVEPAGFNLDRSLQILF 240 +RDNE AAR+IG+PVL+TKLLAFAISSF+IGVAGV+W F YLRTVEPAGF+LDRS QILF Sbjct: 202 IRDNETAARIIGIPVLKTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFDLDRSFQILF 261 Query: 241 IVIIGGLATIRGAFFGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFL 300 I+IIGGLA+IRGAFFGAALIVVFPL LSRLG LLG FDSGVL+MSQRIVLGALII FL Sbjct: 262 IIIIGGLASIRGAFFGAALIVVFPLGLSRLGGFLLGDVFDSGVLDMSQRIVLGALIILFL 321 Query: 301 IVEPQGLAALWQRGRQRL 318 I+EP GL ALW R R+RL Sbjct: 322 ILEPDGLVALWDRVRRRL 339 >APE1304 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 349 Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/316 (35%), Positives = 176/316 (55%), Gaps = 16/316 (5%) Query: 11 PWIASAYLIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSAAFMAVGAFAAYNLNLRVAG 70 P++ Y ++ LL+ + +AA+GLN+ G AGQ+SL AA M +GA+ N L + G Sbjct: 41 PFVIGKYYLN-LLVVMMIFWIAAIGLNITLGLAGQISLAHAALMGIGAYTVANAALHL-G 98 Query: 71 LPLLVSIVLAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSNDNPS 130 + + + +AGLAA +G++ LPS RL+ +YLA+++LAAQ +++V +S +P Sbjct: 99 VNSVAILPIAGLAAALLGIILSLPSFRLKEYYLAMASLAAQLILEYV------YSRIDPD 152 Query: 131 GVIDAPPLVVG--GLAFDTPAGRYLFALAIVTVLTLLCWRLVQSQTGHHFIAVRDNEQAA 188 PP G++ P Y F LAI V+ L + +S G AVRDN+ A+ Sbjct: 153 QYTPVPPETKTLLGISLTEPTALYYFILAITVVMALAAANIGRSSLGRAMKAVRDNDVAS 212 Query: 189 RVIGVPVLRTKLLAFAISSFVIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLA 248 IG+ V K AFAI F GVAG L+ +Y + GF L S+++L +V+IGG Sbjct: 213 EAIGINVQLVKATAFAIGGFYAGVAGGLYA-IYSSGIGWEGFTLVNSIELLGMVLIGGPG 271 Query: 249 TIR-GAFFGAALIVV-FPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQG 306 + G+ G ++ + ++ S + LL G S + ++ IVLG LI+ F+I EP+G Sbjct: 272 RVVWGSLLGVLVMRTGWTMMESTITPLLAGIGL-SIIASSAKYIVLGFLIVAFIIAEPEG 330 Query: 307 LAALWQRGRQ--RLWP 320 L A+ +R ++ RLWP Sbjct: 331 LIAVLRRVKEYFRLWP 346 >AF0225 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 338 Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 20/285 (7%) Query: 37 NLLTGYAGQLSLGSAAFMAVGAFAAYNLNLRV-AGLPLL--VSIVLAGLAATAIGLVFGL 93 +L+ GY GQ++LG F+ +GA+ A L + AGL L ++I+ G+ A +GL G+ Sbjct: 70 DLMVGYTGQVNLGHTTFVGLGAYVAAILQTPIRAGLSLHPALAIITGGVVAAGVGLSIGI 129 Query: 94 PSLRLRGFYLA-VSTLAAQFFVQWVLVKFSWFSNDNPSGVIDAPPLVVGGLAFDTPAGRY 152 +LRLRG+Y + V+ + F+Q V + F + + + T +Y Sbjct: 130 ITLRLRGYYFSLVTAILPLVFMQTVFIWRELFGGEEGFAIENT--------MLTTTVEKY 181 Query: 153 LFALAIVTVLTLLCWRLVQSQTGHHFIAVRDNEQAARVIGVPVLRTKLLAFAISSFVIGV 212 F+LA++ V ++ ++V S+ G F+A+RD+E+ A +G+ + K+LAFA+SSF G+ Sbjct: 182 YFSLAVLVVSLVVMKKVVDSRIGLRFMALRDSEELAESLGINATKYKVLAFALSSFFAGI 241 Query: 213 AGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGGLATIRGAFFGAALIVVFPLLLSRLGS 272 AG + Y TV P + + L I+ ++GGL T+ G GA IV++ L++ + Sbjct: 242 AGAMV-VNYRVTVSPELYGVPLMLLIILSAVLGGLGTLYGPLAGA--IVIY---LAK--N 293 Query: 273 LLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQGLAALWQRGRQR 317 LGQ + L ++ IVL AL+I I+ P+GL + +Q+ Sbjct: 294 WWLGQIIRTLSLPINDDIVLYALLIAVGILMPEGLYHKVKVNKQK 338 >RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 378 Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 102/324 (31%), Positives = 156/324 (48%), Gaps = 44/324 (13%) Query: 33 AVGLNLLTGYAGQLSLGSAAFMAVGAFA-------------AYNLNLRVAGLPLLVSIVL 79 A+GLN++ G+AG L LG AF AVGA+ + L GL LL+ V+ Sbjct: 54 ALGLNIVVGFAGLLDLGYIAFYAVGAYMMALLGSPHLTNQFEWIHQLFPNGLHLLIWWVI 113 Query: 80 ---AGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSN--DNPSGVID 134 AGLAA G++ G P+L+LRG YLA+ TL ++ + N + P GV Sbjct: 114 PLGAGLAAL-FGILLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLDRPVNITNGPKGVNL 172 Query: 135 APPLVVGGLAFDT----------PAGRY-----LFALAIVTVLTLLCWRLVQSQTGHHFI 179 P+ + G F P Y L A+ I+TV C RL S+ G ++ Sbjct: 173 IEPVKLFGFDFSKRHDIFGIHFEPVHMYYYLFVLLAMGIITV----CLRLQNSRIGRAWV 228 Query: 180 AVRDNEQAARVIGVPVLRTKLLAFAISSFVIGVAGVLWGFVYLRTVEPAGFNLDRSLQIL 239 A+R++E AA+ +G+ KLLAFA+ + GV+G ++ + V P F L S+ IL Sbjct: 229 AIREDEIAAKAMGINTRNIKLLAFAMGASFGGVSGAMFA-SFQGFVSPESFVLWESIYIL 287 Query: 240 FIVIIGGLATIRGAFFGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMS--QRIVLGALII 297 IV++GG+ I G G L+V F LL L + + F ++E ++++ G ++ Sbjct: 288 AIVVLGGMGHIPGVILGGILLVGFQELLRALAEPIQNKLFGHVIVEAEVLRQLLFGLAMV 347 Query: 298 FFLIVEPQGLAALWQRGRQRLWPS 321 ++ P G LW R+ P Sbjct: 348 GVMLYRPAG---LWPSPRKEDRPQ 368