BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0048.0027.p         (190 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2357 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aerugi...   186   2e-47
SMb20573 [R] COG0431 Predicted flavoprotein Sme Sinorhizobium me...   137   1e-32
AGpA786 [R] COG0431 Predicted flavoprotein Atu Agrobacterium tum...   135   5e-32
mlr5227 [R] COG0431 Predicted flavoprotein Mlo Mesorhizobium loti     129   5e-30
Cgl1606 [R] COG0431 Predicted flavoprotein Cgl Corynebacterium g...    86   4e-17

>PA2357 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aeruginosa
          Length = 186

 Score =  186 bits (473), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 124/176 (70%)

Query: 1   MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQL 60
           M+ P +VV V+G   RPSRTL L  A+ A+LGQ L I + V+ L+D+A  L +     Q 
Sbjct: 1   MTSPFKVVAVSGGTYRPSRTLVLTQALIAELGQSLPIDSRVIELTDIAAPLGATLARNQA 60

Query: 61  PDPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120
           P  ++  +  IESAD+L+  SPVYRGSY GL KHLFDL+   +LI  PVLLAATGG++RH
Sbjct: 61  PAELQAVLDEIESADLLLVASPVYRGSYPGLLKHLFDLIDLNALIDTPVLLAATGGTERH 120

Query: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVL 176
           AL +DHQLRPLF+FFQA+TLP+GVYA+  +FDN  I+S  L+ RI L  +RA P+ 
Sbjct: 121 ALVLDHQLRPLFSFFQAITLPIGVYASEADFDNYRIVSEPLKARIRLAAERAAPLF 176


>SMb20573 [R] COG0431 Predicted flavoprotein Sme Sinorhizobium meliloti
          Length = 185

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 101/167 (60%)

Query: 6   QVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQLPDPVR 65
           +VV ++G+  RPSRT   +  I  +L        +   + D    LL A  L +L    R
Sbjct: 5   RVVGISGNITRPSRTRAFVDHIVHRLAVDAGASAQTFDIEDFGASLLPARRLDELAPEAR 64

Query: 66  QKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHALAID 125
             +  I +AD+L+  SP ++GSY+GLFKH+FDL+   SL GKPV+LAATGG +RH+L ++
Sbjct: 65  YVVGQILAADILVVASPTFKGSYTGLFKHVFDLLDPSSLRGKPVILAATGGGERHSLMVE 124

Query: 126 HQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRA 172
           HQLRPLF FF+AL +P  +YA+  +F +  + S A+  R+   V  A
Sbjct: 125 HQLRPLFGFFEALAMPTAIYASDKDFADGALASEAIHARVGRAVGEA 171


>AGpA786 [R] COG0431 Predicted flavoprotein Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 200

 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 109/178 (61%)

Query: 1   MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQL 60
           M R + V+ ++GS ++PSRT  ++  I A + +  ++  + + L+  A  L  A    QL
Sbjct: 1   MRRTMNVLGISGSVKQPSRTARVVSDILASIERRASVSVDTIDLAVAAPILFRALRADQL 60

Query: 61  PDPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120
            +  R+ I A+E ADVL+ GSPVYR SY+G  KHLFDLV   +L GK V+LAATGG+  H
Sbjct: 61  DEAGRRIIDAVEIADVLVVGSPVYRASYTGALKHLFDLVDFRALQGKRVVLAATGGTPLH 120

Query: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVLQA 178
            L ++HQ RPLF FF A+T+P  VYA   +F   T+ +P ++ RI   V   + +L A
Sbjct: 121 GLMLEHQFRPLFGFFGAVTVPTTVYAVEADFTGYTLSNPEVEARIERAVAELIDLLPA 178


>mlr5227 [R] COG0431 Predicted flavoprotein Mlo Mesorhizobium loti
          Length = 186

 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 104/187 (55%), Gaps = 1/187 (0%)

Query: 1   MSRPLQVVIVAGSGRRPSRTLGLLHAIAAQLGQHLAIRTEVVALSDLAGQLLSATELAQL 60
           MS P  VV  +G+  RPS+T   +  +   +     +      + D+   L +A     L
Sbjct: 1   MSNP-TVVGFSGNITRPSKTRAFVELVTRDIAARHGLSAVTYDIEDVGPSLGTARWARDL 59

Query: 61  PDPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRH 120
               +  +A I +ADVL+ GSP Y+GSY+GLFKH FDL+   +L GKP++L ATGG +RH
Sbjct: 60  DSQAQPILAQILAADVLVVGSPTYKGSYTGLFKHFFDLIDPAALRGKPIVLTATGGGERH 119

Query: 121 ALAIDHQLRPLFAFFQALTLPLGVYANALEFDNETIISPALQERIALTVQRALPVLQAVA 180
           AL ++HQLRPLF FF+A  LP  VYA   +F +  + S A+ +R A  V     VL   +
Sbjct: 120 ALIVEHQLRPLFGFFEAFALPTAVYATDKDFTDGVLRSEAILKRAAQAVDEVGFVLANRS 179

Query: 181 ATPVQAH 187
           A  + A 
Sbjct: 180 AGRIAAE 186


>Cgl1606 [R] COG0431 Predicted flavoprotein Cgl Corynebacterium glutamicum
          Length = 165

 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 64/93 (68%), Gaps = 3/93 (3%)

Query: 62  DPVRQKIAAIESADVLIAGSPVYRGSYSGLFKHLFDLVPQESLIGKPVLLAATGGSDRHA 121
           D  +Q++A    +D LIA +PV+  SYSG+FK  FD++  ++++G P ++AA+ G+ RH+
Sbjct: 7   DAAKQRLA---ESDGLIAVTPVFTASYSGIFKMFFDVLDPKTIVGLPTIIAASAGTARHS 63

Query: 122 LAIDHQLRPLFAFFQALTLPLGVYANALEFDNE 154
           L +DH +RPLF + +A+ +P GV+A   +F  E
Sbjct: 64  LVLDHAIRPLFTYLRAVVVPTGVFAATEDFGTE 96