BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0005.p (382 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0274 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana... 516 e-146 PA2552 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 511 e-144 AGl2714 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tu... 464 e-130 BMEII0818 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melit... 415 e-115 RSp0652 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana... 403 e-112 >RSc0274 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum Length = 376 Score = 516 bits (1329), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/376 (67%), Positives = 306/376 (81%) Query: 1 MLLSPEHEMIRDAMRHFAQERLLPFAADWDRNHTFPAEALKELAELGAMGMCVPEQWGGA 60 MLL+PE EMIRDA+R F +E ++P AA WDR+ TFP + ++L ELGA G+ VPE +GGA Sbjct: 1 MLLTPEQEMIRDAIRTFVREAIVPHAAAWDRDATFPKDVHRQLGELGAYGVAVPEAYGGA 60 Query: 61 GMDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITEKYGSPTQKEQWLKPLARGEMLGC 120 G+DY+SL L LEEIAAGDG TST++SV N C + Y QK++WL PLARGEMLG Sbjct: 61 GLDYLSLALILEEIAAGDGGTSTVISVNNCPVCSMLMAYADEAQKQRWLAPLARGEMLGA 120 Query: 121 FCLTEPHTGSDAAAIRTRAERDGDDFILNGTKQFITSGKHAGVAIVFAVTDRSAGKKGIS 180 FCLTEPH GSDAAA+RT A RDG+ ++LNG KQFITSGKHA VAIV AVTD++AGK+GIS Sbjct: 121 FCLTEPHVGSDAAALRTTATRDGEHWVLNGVKQFITSGKHADVAIVMAVTDKAAGKRGIS 180 Query: 181 CFLVPCDTPGFVVGRSEEKMGQHASDTVQIMLDNCRVPATALLGKEGEGYRIALSNLEAG 240 FLVP TPG++V R E+K+GQH+SDT QI+L++CR+PA LLG GEGYR+ALS LE G Sbjct: 181 AFLVPTATPGYIVARLEDKLGQHSSDTAQIVLEDCRIPADCLLGSAGEGYRMALSGLEGG 240 Query: 241 RIGIAAQSVGMARAAFEAAVSYARQRESFGVPIIEHQAVNFRLADMNTLLDAARLMVWRA 300 RIGIAAQSVGMARAAFEAA++YA++RESFG P+ HQAV FRLA+M T +D AR MVW A Sbjct: 241 RIGIAAQSVGMARAAFEAALAYAKERESFGQPLFAHQAVQFRLAEMATRIDVARQMVWHA 300 Query: 301 AQLKDQGRPCLKEASMAKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIY 360 A LKD GR CLKEA+MAK+ ASE AE++ SDAIQ+ GG GY SDFPVERIYRDVR+CQIY Sbjct: 301 ASLKDAGRACLKEAAMAKLNASEMAERVCSDAIQVFGGYGYVSDFPVERIYRDVRVCQIY 360 Query: 361 EGANDIQRLVIGRAIA 376 EG +DIQ+++I RA+A Sbjct: 361 EGTSDIQKILIARALA 376 >PA2552 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 375 Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust. Identities = 247/375 (65%), Positives = 296/375 (78%) Query: 1 MLLSPEHEMIRDAMRHFAQERLLPFAADWDRNHTFPAEALKELAELGAMGMCVPEQWGGA 60 M+ E IRD R FAQERL PFAADWDR H FPAEA++E+A+LG +GM VPE+WGGA Sbjct: 1 MIPCEEEIQIRDMARQFAQERLKPFAADWDREHRFPAEAIREMADLGFLGMLVPEEWGGA 60 Query: 61 GMDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITEKYGSPTQKEQWLKPLARGEMLGC 120 +++ +ALEEIAAGDGA STI+SV NS+ C K+GS QKE++L+PLA+G MLG Sbjct: 61 QTGHLAYAMALEEIAAGDGACSTIMSVHNSVGCMPIHKFGSAEQKERFLRPLAQGSMLGA 120 Query: 121 FCLTEPHTGSDAAAIRTRAERDGDDFILNGTKQFITSGKHAGVAIVFAVTDRSAGKKGIS 180 F LTEP GSDA+ ++TRA RDGD ++LNG KQFITSG HAG+ IVFAVTD AGK+GIS Sbjct: 121 FALTEPQAGSDASFLKTRARRDGDHYVLNGAKQFITSGSHAGMVIVFAVTDPDAGKRGIS 180 Query: 181 CFLVPCDTPGFVVGRSEEKMGQHASDTVQIMLDNCRVPATALLGKEGEGYRIALSNLEAG 240 F+VP DTPG+ V R E+K+GQHASDT Q+ ++ R+PAT LG+EGEGYRIAL+NLE G Sbjct: 181 AFIVPTDTPGYEVVRIEDKLGQHASDTCQLAFNDLRIPATLRLGEEGEGYRIALANLEGG 240 Query: 241 RIGIAAQSVGMARAAFEAAVSYARQRESFGVPIIEHQAVNFRLADMNTLLDAARLMVWRA 300 RIGIAAQ+VGMARAAFEAA YA +RE+FG PIIEHQAV FRLADM T + AR MV A Sbjct: 241 RIGIAAQAVGMARAAFEAARDYAHERETFGKPIIEHQAVAFRLADMATRIAVARQMVHHA 300 Query: 301 AQLKDQGRPCLKEASMAKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIY 360 A L++ G PCL EASMAK+FASE AE++ S AIQ GG GY DFPVERIYRDVR+CQIY Sbjct: 301 ASLREAGLPCLTEASMAKLFASEMAEEVCSAAIQTLGGYGYLKDFPVERIYRDVRVCQIY 360 Query: 361 EGANDIQRLVIGRAI 375 EG +D+QRLVI R++ Sbjct: 361 EGTSDVQRLVIARSL 375 >AGl2714 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 380 Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust. Identities = 231/375 (61%), Positives = 283/375 (75%) Query: 1 MLLSPEHEMIRDAMRHFAQERLLPFAADWDRNHTFPAEALKELAELGAMGMCVPEQWGGA 60 M+L+ + IRD R FA+ERL P AA DR FP + LKE+ ELG +GM V E +GG+ Sbjct: 6 MILNEAQQQIRDMARDFARERLSPGAAARDRESRFPKDELKEMGELGFLGMLVSEDYGGS 65 Query: 61 GMDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITEKYGSPTQKEQWLKPLARGEMLGC 120 ++ LALEEIAAGDGA STI+SV NS+ C K+G+ QK+++L LA GE +G Sbjct: 66 ETGAVAYALALEEIAAGDGACSTIMSVHNSVGCVPILKFGTEEQKQRFLPKLAAGEWIGG 125 Query: 121 FCLTEPHTGSDAAAIRTRAERDGDDFILNGTKQFITSGKHAGVAIVFAVTDRSAGKKGIS 180 F LTEP GSDA+ ++TRA RDGD ++L+G KQFITSGK+ V IVFAVTD +AGKKGI+ Sbjct: 126 FALTEPQAGSDASNLKTRARRDGDRYVLDGAKQFITSGKNGDVIIVFAVTDAAAGKKGIT 185 Query: 181 CFLVPCDTPGFVVGRSEEKMGQHASDTVQIMLDNCRVPATALLGKEGEGYRIALSNLEAG 240 F+VP DTPG+ V R EEK+G H+SDT QI VP LG+EG+GYRIAL+NLE G Sbjct: 186 AFIVPTDTPGYEVIRVEEKLGLHSSDTCQIAFTEMAVPVDLRLGEEGQGYRIALANLEGG 245 Query: 241 RIGIAAQSVGMARAAFEAAVSYARQRESFGVPIIEHQAVNFRLADMNTLLDAARLMVWRA 300 RIGIAAQ+VGMA+AAFEAA YAR+R++FG IIEHQAV FRLADM T + AAR +V A Sbjct: 246 RIGIAAQAVGMAQAAFEAARDYARERKAFGQAIIEHQAVAFRLADMATRITAARQLVLHA 305 Query: 301 AQLKDQGRPCLKEASMAKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIY 360 A LK+ G PCL EASMAK+FASE AE++ SDAIQIHGG GY +D+PVERIYRDVRICQIY Sbjct: 306 AALKEAGEPCLSEASMAKLFASEMAERVCSDAIQIHGGYGYMADYPVERIYRDVRICQIY 365 Query: 361 EGANDIQRLVIGRAI 375 EG +D+QR+VI R + Sbjct: 366 EGTSDVQRMVIARNL 380 >BMEII0818 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melitensis Length = 380 Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/345 (60%), Positives = 256/345 (74%) Query: 1 MLLSPEHEMIRDAMRHFAQERLLPFAADWDRNHTFPAEALKELAELGAMGMCVPEQWGGA 60 MLL+ E IR+A R FAQERL P AA DR H FP L E+ LG +GM VPE+WGG+ Sbjct: 1 MLLTDTQEQIREAARDFAQERLAPGAAARDREHAFPRAELTEMGALGFLGMLVPEEWGGS 60 Query: 61 GMDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITEKYGSPTQKEQWLKPLARGEMLGC 120 + ++ LALEEIAAGDGA STIVSV +S+ C ++G+ QK ++L +A GE +G Sbjct: 61 DLGMVAYALALEEIAAGDGACSTIVSVHSSVGCMPILRFGTEDQKRRFLPKMACGEWIGG 120 Query: 121 FCLTEPHTGSDAAAIRTRAERDGDDFILNGTKQFITSGKHAGVAIVFAVTDRSAGKKGIS 180 F LTEP GSDA+A++TRA DGD ++++G+KQFITSGK+ V IVFAVTD +AGKKGIS Sbjct: 121 FALTEPQAGSDASALKTRARLDGDHYVIDGSKQFITSGKNGNVVIVFAVTDPAAGKKGIS 180 Query: 181 CFLVPCDTPGFVVGRSEEKMGQHASDTVQIMLDNCRVPATALLGKEGEGYRIALSNLEAG 240 F+VP DTPG+ V E K+GQH+SDT + N RVP LG EGEGY+IAL+NLE G Sbjct: 181 AFIVPTDTPGYEVMSVEHKLGQHSSDTCALGFTNMRVPVENRLGAEGEGYKIALANLEGG 240 Query: 241 RIGIAAQSVGMARAAFEAAVSYARQRESFGVPIIEHQAVNFRLADMNTLLDAARLMVWRA 300 RIGIAAQ+VGMARAAFEAA YAR+R +FG PIIEHQAV FRLADM T ++ AR MV A Sbjct: 241 RIGIAAQAVGMARAAFEAARDYARERITFGKPIIEHQAVAFRLADMATRIETARQMVLHA 300 Query: 301 AQLKDQGRPCLKEASMAKMFASEAAEKIASDAIQIHGGVGYTSDF 345 A L++ G+PCL EASMAK+ ASE AE++ S AIQIHGG GY +D+ Sbjct: 301 AALREAGKPCLTEASMAKLVASEMAEQVCSAAIQIHGGYGYLADY 345 >RSp0652 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum Length = 377 Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust. Identities = 214/375 (57%), Positives = 270/375 (72%), Gaps = 2/375 (0%) Query: 2 LLSPEHEMIRDAMRHFAQERLLPFAADWDRNHTFPAEALKELAELGAMGMCVPEQWGGAG 61 + E MI DA R FA ERL P AA WDR+ P + + ++ ELG +GM VP +WGG+ Sbjct: 4 FYTDEQRMILDAARDFATERLAPHAAQWDRDSRLPDDVVAQMGELGLLGMMVPPEWGGSY 63 Query: 62 MDYMSLVLALEEIAAGDGATSTIVSVQNSLACGITEKYGSPTQKEQWLKPLARGEMLGCF 121 DY++ LALEEIAAG A +T++SV NS+ CG K+G+ QK ++L LA G +G F Sbjct: 64 TDYVAYALALEEIAAGCAACATMMSVHNSVGCGPILKFGTDAQKARYLPDLATGRAIGAF 123 Query: 122 CLTEPHTGSDAAAIRTRA-ERDGDDFILNGTKQFITSGKHAGVAIVFAVTDRSAGKKGIS 180 CLTEPH GS+A +RTRA RDG ++LNG+KQF+T+G A +AIVFAVTD AGK+GIS Sbjct: 124 CLTEPHAGSEANNLRTRAVPRDG-HWVLNGSKQFVTNGARAQLAIVFAVTDPDAGKRGIS 182 Query: 181 CFLVPCDTPGFVVGRSEEKMGQHASDTVQIMLDNCRVPATALLGKEGEGYRIALSNLEAG 240 F+VP TPGF VGR E K+G ASDT I L++C VPA LLG+ GEG +IALSNLE G Sbjct: 183 AFIVPTQTPGFHVGRPEHKLGIRASDTCPITLEDCAVPAANLLGEPGEGLKIALSNLEGG 242 Query: 241 RIGIAAQSVGMARAAFEAAVSYARQRESFGVPIIEHQAVNFRLADMNTLLDAARLMVWRA 300 RIGIAAQ+VG+ARAAF+AA YA +R FG + EHQ + LADM T L+AARL+V A Sbjct: 243 RIGIAAQAVGIARAAFDAARRYANERVQFGKALREHQTIANMLADMATRLNAARLLVHHA 302 Query: 301 AQLKDQGRPCLKEASMAKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIY 360 A+L+ +PCL EAS AK++ASE AE+I S AIQIHGG GY +D+ VER YRD RI QIY Sbjct: 303 ARLRSADKPCLSEASQAKLYASELAEEICSKAIQIHGGYGYLADYAVERHYRDARITQIY 362 Query: 361 EGANDIQRLVIGRAI 375 EG +++QR+VI R + Sbjct: 363 EGTSEVQRMVIARHV 377