BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0047.0003.p         (267 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2304 Non COG                                                        100   4e-21
PA2303 Non COG                                                         98   2e-20

>PA2304 Non COG
          Length = 362

 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 103 AIPLVIEPAAAGLDMAEWARRERGYIADMLCKHGGVLFRNFGLRTPADFETFAEAIEPEL 162
            +PL+IE  A GL +A+W R +   + D L   GG+L R F + +   F   A A  P+L
Sbjct: 37  GLPLLIEAQAPGLSLADWIREQGQSLHDDLNLAGGLLLRGFEVDSAERFRAAAAAFAPQL 96

Query: 163 YG-GYGDLPKNDGGKNTYRSTPYPEKEMILFHNESAHMERWPRKQWFFCELPSPVGGATP 221
                   P++      Y ST +P  + I  HNE ++   WP    F C++    GGATP
Sbjct: 97  LDYKERSSPRSQVSGEVYTSTEHPVDQPIFLHNEQSYTADWPLYIMFHCQVAPLEGGATP 156

Query: 222 IVDCREVYRRLPAELAQRFEQKQLLYIRTFTERLDVSWRDFFKTDD 267
           +   R V R LP EL +RF +  +LY+R +   L +SWR+ F+TD 
Sbjct: 157 VAANRLVLRHLPDELLERFGRLGILYVRNYRAGLGLSWREAFQTDS 202



 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%)

Query: 4   HPQTGEKVFFNQVQLHHIACLDPSVRRDLLAMVGMERMPRHVTYGDGSEIDEQTMALVGQ 63
           HP TGE+++FN     H   L+P +R  LL  V  E +P    YGDGS I+ QT+A +  
Sbjct: 237 HPYTGERLWFNHGMFFHATSLEPGLRDALLRSVAEEDLPYQTYYGDGSPIEAQTLATIRS 296

Query: 64  LYEQCAVRFTWQQGDVVMLDNMIAAHARDPYEGPRKIVVAI 104
             ++   RF W+ GDV++LDNM+A H R+P+ GPR+I+  +
Sbjct: 297 AIDRETRRFDWRVGDVLILDNMLAQHGREPFRGPRRILTIM 337


>PA2303 Non COG
          Length = 339

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 68/104 (65%)

Query: 1   VITHPQTGEKVFFNQVQLHHIACLDPSVRRDLLAMVGMERMPRHVTYGDGSEIDEQTMAL 60
           ++ HP +GE ++FN   + H++ + P++ R LL  VG + +PR+  YGDGS I+ + +  
Sbjct: 228 MVRHPLSGETLWFNHAHMFHVSNMPPALARALLDEVGEQGLPRNAYYGDGSPIEAEVLDT 287

Query: 61  VGQLYEQCAVRFTWQQGDVVMLDNMIAAHARDPYEGPRKIVVAI 104
           +   Y +    F W++GDV+MLDN I+ H R+PY G RK++VA+
Sbjct: 288 IRAAYREETRAFAWERGDVLMLDNFISVHGREPYTGERKVLVAM 331



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 1/162 (0%)

Query: 107 VIEPAAAGLDMAEWARRERGYIADMLCKHGGVLFRNFGLRTPADFETFAEAIEPELYGGY 166
           ++     G+D+ +W       + D L +HGG+LFR F +     F    ++  P +    
Sbjct: 35  IVRARQPGMDLRQWIAAAGAGLRDSLLRHGGILFRGFAVDGAEGFSQAVQSFSPNMLDYL 94

Query: 167 G-DLPKNDGGKNTYRSTPYPEKEMILFHNESAHMERWPRKQWFFCELPSPVGGATPIVDC 225
                + +     + ST +     I  H+E ++   WP    F+C+ P    G TP+ D 
Sbjct: 95  ERAAARQEVAHRVFTSTEFSPDGWIPPHHEMSYSHNWPSYIHFYCQTPPATQGRTPLADE 154

Query: 226 REVYRRLPAELAQRFEQKQLLYIRTFTERLDVSWRDFFKTDD 267
           R V  R+P  + QRF +  + Y+R +   +D++W++ F+TD 
Sbjct: 155 RRVSARIPEAIRQRFLRHGVCYVRNYGPEIDLTWQEGFQTDS 196