BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0029.p         (210 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3900 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa...   139   5e-33
PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa...   109   4e-24
PA2467 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa...   106   3e-23
PA4895 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa...    94   3e-19
PA0471 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa...    73   4e-13

>PA3900 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae
           Pseudomonas aeruginosa
          Length = 317

 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 109/175 (62%), Gaps = 4/175 (2%)

Query: 13  AADVPPQVAERALEWLLELQTQPLAPSTLEAWEAWRSAHPDHERAWRRIESVRGRLQALA 72
           A  VPPQVAE+A+ WL+ELQ         +AW+ WR A P+HE+AWR IE+V  RL  + 
Sbjct: 6   APKVPPQVAEQAVRWLVELQGGADDERLRQAWQRWRQAAPEHEQAWRHIEAVNQRLAGIG 65

Query: 73  SPVNAALAQATLTPAPSGNRRQVIKTLALLVFGGGVAWGLTRSEPWQQWRADLRTDIGQQ 132
           +P+  A   A  +P     RR+ +KTL L++  GG AWGL  S   Q+W AD  T +G++
Sbjct: 66  TPLALAAINAPHSP----QRRRALKTLLLVLAAGGSAWGLRESGSLQRWSADYATGVGER 121

Query: 133 RRLVLEDGSQLVLNTHSAVNLAFSAEERRLRLISGELLVTTGKAGGGLHQRRAAG 187
           RRL L DGS+L LN+ +AV++ F A ERRL L+ GE+ ++TG     LH   A G
Sbjct: 122 RRLALADGSRLELNSDTAVDVRFDAGERRLLLLRGEIQLSTGHDPRPLHVYSAEG 176


>PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae
           Pseudomonas aeruginosa
          Length = 316

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 91/163 (55%), Gaps = 4/163 (2%)

Query: 11  ADAADVPPQVAERALEWLLELQTQPLAPSTLEAWEAWRSAHPDHERAWRRIESVRGRLQA 70
           AD   +P  + + A EWL+ LQ       T +A   WR   P H  AW R E +   LQ 
Sbjct: 4   ADEGRIPSPILDEAAEWLVRLQDSGCTDDTRQACAQWRQRSPQHAHAWERAERL---LQC 60

Query: 71  LASPVNAALAQATLTPAPSGNRRQVIKTLALLVFGGGVAWGLTRSEPWQQWRADLRTDIG 130
           L   +  ALA  TL      +RR+ IK LAL++ G  +     ++EP + W AD RT +G
Sbjct: 61  LGR-LPPALALPTLGRERGLDRRRAIKHLALVLGGASLGLATWQAEPLRDWLADQRTGVG 119

Query: 131 QQRRLVLEDGSQLVLNTHSAVNLAFSAEERRLRLISGELLVTT 173
           +QRRL L DGS L LNT SAV+LAF A +R +RL+ GE+ V +
Sbjct: 120 EQRRLTLPDGSLLTLNTDSAVDLAFDASQRLVRLLRGEIFVDS 162


>PA2467 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae
           Pseudomonas aeruginosa
          Length = 328

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 1/160 (0%)

Query: 16  VPPQVAERALEWLLELQTQPLAPSTLEAWEAWRSAHPDHERAWRRIESVRGRLQALASPV 75
           V   V  +A+ WL+ L++QP       A  AWR+ H +HERAW+++ ++   LQ     +
Sbjct: 8   VDEAVVRQAIHWLVRLRSQPADDRLQRACAAWRAEHGEHERAWQQVSALNEELQGRFKAL 67

Query: 76  NAALAQATL-TPAPSGNRRQVIKTLALLVFGGGVAWGLTRSEPWQQWRADLRTDIGQQRR 134
              +A  TL + A    RRQ +K L+LLV GG VAW    S PWQ+  AD  T  G++R 
Sbjct: 68  PGGVAYGTLDSSAQRLQRRQALKLLSLLVAGGAVAWVGRDSLPWQRLSADYSTATGERRS 127

Query: 135 LVLEDGSQLVLNTHSAVNLAFSAEERRLRLISGELLVTTG 174
           + L DG++L LNT SAV++ + A +R + L  GE+ + +G
Sbjct: 128 IELVDGTRLQLNTDSAVDVRYDAGQRLILLARGEIFLASG 167


>PA4895 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae
           Pseudomonas aeruginosa
          Length = 340

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 96/167 (57%), Gaps = 9/167 (5%)

Query: 9   PTADAADVPPQVAERALEWLLELQTQPLAPSTLEAWEAWRSAHPDHERAWRRIESVRGRL 68
           P A+A  + PQV      WLL +Q  PLAP+     E+WRS  P+H+RAWRR E    RL
Sbjct: 21  PAAEA--IAPQVLRETASWLLLMQEGPLAPAQQAELESWRSRSPEHQRAWRRAE----RL 74

Query: 69  QALASPVNAALAQATLT-PAPSGNRRQVIKTLALLVFGGGVAWGLTRSEPWQQ-WRADLR 126
            A    +  ALA+  L  P+ SG R  +     LL     V WG  R++ W+  + AD  
Sbjct: 75  LANIGSLPPALARRALERPSGSGRRAVLRGLALLLGGAPLVWWGW-RAQVWRDGFGADYL 133

Query: 127 TDIGQQRRLVLEDGSQLVLNTHSAVNLAFSAEERRLRLISGELLVTT 173
           T +G++R LVLEDGSQ+ +NT SA+++ + A +R LRL  GE+ + T
Sbjct: 134 TAVGERRDLVLEDGSQVEMNTDSALDVRYDAGQRLLRLYRGEIYLRT 180


>PA0471 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae
           Pseudomonas aeruginosa
          Length = 323

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 19  QVAERALEWLLELQTQPLAPSTLEAWEAWRSAHPDHERAWRRIESVRGRLQALASPVNAA 78
           +V + A+ W L L +    P    A+  W +AHP+HERAW   E + G  + LA   N  
Sbjct: 13  RVLDEAIAWQLLLDSGEAHPDDHRAFHRWYAAHPEHERAW---EQLGGLDRHLARAANGP 69

Query: 79  LAQATLTPAPSGNRR-QVIKTLAL-LVFGGGVAWGL-TRSEPWQQWRADLRTDIGQQRRL 135
              A L+      RR + +   AL LV   GV  G+  R  P +   AD  +  G+QR L
Sbjct: 70  ARNALLSGNARFKRRLRRLGGSALGLVLALGVGLGVANRYVPVRYLLADAYSATGEQREL 129

Query: 136 VLEDGSQLVLNTHSAVNLAFSAEERRLRLISGELLVTT 173
            L D + + LN+ SA+++ F  E R++ L++GE+LV T
Sbjct: 130 TLPDATHVRLNSRSAIDVRFDGERRQVVLLAGEILVET 167