BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0025.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0354 [K] COG0789 Predicted transcriptional regulators Sty Sal...   166   1e-41
RSc3347 [K] COG0789 Predicted transcriptional regulators Rso Ral...   162   2e-40
SMb21579 [K] COG0789 Predicted transcriptional regulators Sme Si...   160   8e-40
AGc1709 [K] COG0789 Predicted transcriptional regulators Atu Agr...   160   8e-40
SMa1014 [K] COG0789 Predicted transcriptional regulators Sme Sin...   148   3e-36

>STM0354 [K] COG0789 Predicted transcriptional regulators Sty Salmonella
           typhimurium LT2
          Length = 154

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 99/131 (75%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60
           MNIG+AA AS VSAKMIR+YE+ GLIP ASRTD+GYR Y Q DV+ L FIR+AR LGFS+
Sbjct: 1   MNIGKAAKASKVSAKMIRYYEQIGLIPAASRTDSGYRAYTQADVNQLHFIRRARDLGFSV 60

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDC 120
           A++SDL+ LW +QSR S  VK+LAQTHI EL++RI  +Q M  TL+ L+  C GD  PDC
Sbjct: 61  AEISDLLNLWNNQSRQSADVKRLAQTHIDELDRRIQNMQHMAQTLKALIHCCAGDALPDC 120

Query: 121 PILEALGGDAD 131
           PIL  LG   D
Sbjct: 121 PILHTLGQPDD 131


>RSc3347 [K] COG0789 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 159

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 97/133 (72%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60
           +NIGEAA ASGVSAKMIR+YE  GL+P + RT+  YRVY  R +H+LRFI +AR LGFS+
Sbjct: 15  VNIGEAARASGVSAKMIRYYERIGLLPPSPRTEGNYRVYDPRALHVLRFIHRARSLGFSL 74

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDC 120
            ++  L+ LW D++R S  VK +   H+A+L+ RI ELQGM+ TL  L   CHGD+RPDC
Sbjct: 75  EEIRTLLSLWHDRARASADVKAITLRHVADLDARIRELQGMRDTLVTLADACHGDDRPDC 134

Query: 121 PILEALGGDADCC 133
           PILE + G+A  C
Sbjct: 135 PILEGVAGEASPC 147


>SMb21579 [K] COG0789 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 147

 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 95/128 (74%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60
           MNIGEA+  SGVS+KMIR+YE+ GLI  A RT++ YR YG  DVH LRF+R+AR LGFS+
Sbjct: 1   MNIGEASKTSGVSSKMIRYYEQIGLISPALRTESSYRTYGDNDVHTLRFVRRARDLGFSV 60

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDC 120
            Q+ +L+ LW D+SR S  VK +A  HIAELE++I+ +Q M  TL+ L   CHGD+RPDC
Sbjct: 61  EQIKELLALWRDRSRASSDVKAVALEHIAELERKIAAIQEMTRTLKHLAGHCHGDDRPDC 120

Query: 121 PILEALGG 128
           PI+E +  
Sbjct: 121 PIIEEIAN 128


>AGc1709 [K] COG0789 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 140

 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 97/128 (75%)

Query: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60
           MNIG+A+ ASGVSAKMIR+YE+ GLI  A+RT   YRVYG++DVH LRFI++AR LGFS+
Sbjct: 1   MNIGQASEASGVSAKMIRYYEQIGLITPAARTGNNYRVYGEQDVHNLRFIKRARTLGFSL 60

Query: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDC 120
            +   L+ LW D+SR S  VK++A  HIA+LEQ+I+E++ M  TL  L   C GD+RPDC
Sbjct: 61  EETETLLKLWQDKSRESSAVKEIALVHIADLEQKIAEMKSMVKTLSHLAHCCGGDHRPDC 120

Query: 121 PILEALGG 128
           PIL+ L G
Sbjct: 121 PILDDLAG 128


>SMa1014 [K] COG0789 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 138

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 90/122 (73%)

Query: 10  SGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSMAQVSDLIGL 69
           SGVS+KMIR+YE+ GLI  A RT + YRVYG  D+H L+F+R+AR LGFS+ Q+ DL+ L
Sbjct: 2   SGVSSKMIRYYEQIGLIRPALRTASSYRVYGDNDIHTLQFVRRARDLGFSVEQIKDLLAL 61

Query: 70  WLDQSRPSRKVKQLAQTHIAELEQRISELQGMKATLEQLVQGCHGDNRPDCPILEALGGD 129
           W D+SR S  VK +A  HIAELE++I+ ++ M  TL+ L   CHGD+RP+CPI+E +   
Sbjct: 62  WRDRSRNSANVKAVALEHIAELERKIAAIEEMTTTLKHLASHCHGDDRPECPIIEEIANA 121

Query: 130 AD 131
           AD
Sbjct: 122 AD 123