BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0017.p (212 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L58125 [V] COG1131 ABC-type multidrug transport system, ATPase c... 71 1e-12 lin0744 [V] COG1131 ABC-type multidrug transport system, ATPase ... 70 5e-12 SP0522 [V] COG1131 ABC-type multidrug transport system, ATPase c... 67 2e-11 SPy1729 [V] COG1131 ABC-type multidrug transport system, ATPase ... 67 4e-11 AGl1253 [E] COG1126 ABC-type polar amino acid transport system, ... 66 6e-11 >L58125 [V] COG1131 ABC-type multidrug transport system, ATPase component Lla Lactococcus lactis Length = 256 Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 6/170 (3%) Query: 10 LLLVSRLNFSYPGLDLFQDFSARIAPG--VTLVRGGDGRGKTTLLNLLAGLMPVRDGVLE 67 +L V+ L Y G + +D + I G V L+ G +G GK+T + + GL+ G +E Sbjct: 1 MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLI-GLNGAGKSTTIQEIIGLLTPYSGQIE 59 Query: 68 LDGLRLDSEAENFRRQVFFIDPRSEAYEQMTPPEVFAALAERYP---HFDHARLPALTEG 124 LDGL L + E +RR++ FI YE++T E A Y R L E Sbjct: 60 LDGLTLQQDLEGYRRKIGFIPETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLET 119 Query: 125 LSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASIN 174 L+ L+ S G K+KV + AF + +L ++D+P+ LD +I Sbjct: 120 FRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPFMGLDPLAIQ 169 >lin0744 [V] COG1131 ABC-type multidrug transport system, ATPase component Lin Listeria innocua Length = 229 Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 10 LLLVSRLNFSYPGLDLFQDFSARIAPGVTLV-RGGDGRGKTTLLNLLAGLMPVRDGVLEL 68 +L+ + + SYP + Q+ PG +V G +G GKTTLL++LA L G L+L Sbjct: 1 MLVGNNIAKSYPNKLVLQNVDFEAKPGDMIVLTGENGSGKTTLLDMLANLKKPDSGKLQL 60 Query: 69 DG-LRLDSEAENFRRQVFFIDPRSEAYEQMTPPEVFAALAERYPHFDHARLPALTEGLSL 127 D + + SE R+Q+ +++ A + T E A + + D + L G + Sbjct: 61 DNEVFITSE---IRQQIAYLNNELYAKKSTTIEEFMKQHALLFENMDLDKWERLLSGWRI 117 Query: 128 TPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLD 169 + L KL LSTG KV +A+ A QA + L D+P+AS+D Sbjct: 118 SKRL--KLGELSTGMLMKVKIASVLARQAKVYLYDEPFASID 157 >SP0522 [V] COG1131 ABC-type multidrug transport system, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 243 Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 6/184 (3%) Query: 10 LLLVSRLNFSYPGLDLFQDFSARIAPG--VTLVRGGDGRGKTTLLNLLAGLMPVRDGVLE 67 +L + L Y + + +D S + G V L+ G +G GK+T +N + GL+ G + Sbjct: 1 MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLI-GLNGAGKSTTINEIIGLLAPYSGSIN 59 Query: 68 LDGLRLDSEAENFRRQVFFIDPRSEAYEQMTPPEVFAALAERY---PHFDHARLPALTEG 124 ++GL L +A ++R+Q+ +I YE++T E +A Y R+ L + Sbjct: 60 INGLTLQGDATSYRKQIGYIPETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKM 119 Query: 125 LSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFVAAMLNAHA 184 L L+ S G K+KV + AF +L ++D+P+ LD +I+ + +L Sbjct: 120 FRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPFLGLDPLAISDLIQLLEVEK 179 Query: 185 EDAR 188 + + Sbjct: 180 QKGK 183 >SPy1729 [V] COG1131 ABC-type multidrug transport system, ATPase component Spy Streptococcus pyogenes M1 GAS Length = 241 Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 6/170 (3%) Query: 10 LLLVSRLNFSYPGLDLFQDFSARIAPG--VTLVRGGDGRGKTTLLNLLAGLMPVRDGVLE 67 +L + L Y + + D S + G V L+ G +G GK+T +N + G + G + Sbjct: 1 MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLI-GLNGAGKSTTINEIIGFLKPYQGSIS 59 Query: 68 LDGLRLDSEAENFRRQVFFIDPRSEAYEQMTPPEVFAALAERYP---HFDHARLPALTEG 124 +DGL L A +R+++ FI YE++T E +A Y R E Sbjct: 60 IDGLTLAENAVAYRQKIGFIPETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEM 119 Query: 125 LSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASIN 174 LT LE S G K+KV + AF +L +LD+P+ LD +I+ Sbjct: 120 FRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPFLGLDPLAIS 169 >AGl1253 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 249 Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 9/198 (4%) Query: 5 SDRTALLLVSRLNFSY-PGLDLFQDFSARIAPG-VTLVRGGDGRGKTTLLNLLAGLMPVR 62 S T+++ + +N Y P + + S +A G V ++ G G GK+TL+ + L + Sbjct: 2 SQTTSMIELQSVNKWYGPHFQVLTNCSLNVAKGEVVVICGPSGSGKSTLIKCVNALETIG 61 Query: 63 DGVLELDGLRL---DSEAENFRRQVFFIDPRSEAYEQMTPPEVFAALAE----RYPHFDH 115 +GV+ ++G+ + ++ R +V + E + MT E E R P Sbjct: 62 NGVITVNGVEVTNPKTDMPKLRSRVGMVFQHFELFPHMTILENLCIGQEKVLGRTPAEAL 121 Query: 116 ARLPALTEGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINF 175 A+ AL E + LT H K LS G +++V +A A A L D+P ++LD IN Sbjct: 122 AKANALLERVGLTAHARKYPGQLSGGQQQRVAIARALAMDPVAMLFDEPTSALDPEMINE 181 Query: 176 VAAMLNAHAEDARQAWVV 193 V ++ + A++ VV Sbjct: 182 VLDVMVSLAQEGMTMMVV 199