BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0008.p         (173 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0488 [T] COG0642 Signal transduction histidine kinase Rso Ral...   152   5e-37
PA4886 [T] COG0642 Signal transduction histidine kinase Pae Pseu...   135   6e-32
ZybcZ [T] COG0642 Signal transduction histidine kinase EcZ Esche...   122   5e-28
ECs0608 [T] COG0642 Signal transduction histidine kinase Ecs Esc...   122   5e-28
ybcZ [T] COG0642 Signal transduction histidine kinase Eco Escher...   122   5e-28

>RSp0488 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia
           solanacearum
          Length = 465

 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 104/161 (64%)

Query: 9   WXARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLVVQGAGRLQADATLLRRAV 68
           + ARA++A V L    LD   E+  + DYFE +A +  + + V G GR++AD TLLRRA+
Sbjct: 305 FLARADHARVALSVAPLDARHEIQVLVDYFEAVAADRDITIQVCGNGRVRADLTLLRRAI 364

Query: 69  GNLVANAIRYTPADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERLFDRFYRADPSRSS 128
            NL+ NA+R+TP    I + V        I+V NPG GIPA  L  LFDRFYR DP+R++
Sbjct: 365 NNLLDNALRHTPGGARIDVAVQVLPHSTAIAVRNPGPGIPAASLPLLFDRFYRGDPARAN 424

Query: 129 AGGSSGLGLAIVRSIMMLHGGQASVTSSPGQLTVFSLRFPG 169
           +  S+GLGLAIV++IM LHGG A  +S PG LT F L FP 
Sbjct: 425 SERSAGLGLAIVQTIMDLHGGTAQASSPPGGLTEFRLIFPA 465


>PA4886 [T] COG0642 Signal transduction histidine kinase Pae Pseudomonas
           aeruginosa
          Length = 463

 Score =  135 bits (339), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 114/164 (69%), Gaps = 5/164 (3%)

Query: 9   WXARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLVVQGAGRLQADATLLRRAV 68
           + ARA++    ++   LD+ +EL R A+YFEG+A+E  + L VQ +G+L+AD  L RRA+
Sbjct: 302 FLARADDVRAAVERSRLDLGEELRRQAEYFEGLAEERGLSLDVQVSGQLRADPQLFRRAL 361

Query: 69  GNLVANAIRYTPADGVIRLQ-VDAAGDGMEISVSNPGAGIPAEQLERLFDRFYRADPSRS 127
            NL+ANAIRY  AD +I ++ +  +G+ + +SV N    +PAE L RLFDRFYR D +RS
Sbjct: 362 SNLLANAIRYASADSLIEVRGLRRSGEFL-LSVENACDRLPAEPLSRLFDRFYRGDAARS 420

Query: 128 SAGGSSGLGLAIVRSIMMLHGGQASVTS-SPGQLTVFSLRFPGR 170
            A  SSGLGLAIV++IM LHGG+A  ++ +PG++  F L FP +
Sbjct: 421 DA-QSSGLGLAIVQAIMRLHGGRAEASAPAPGRIR-FDLAFPAQ 462


>ZybcZ [T] COG0642 Signal transduction histidine kinase EcZ Escherichia
           coli O157:H7 EDL933
          Length = 482

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 101/163 (61%), Gaps = 2/163 (1%)

Query: 9   WXARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLVVQG-AGRLQADATLLRRA 67
           + A+A+N  ++ + + L++A E+ ++ D+FE +A++  V L   G   ++  D  +LRRA
Sbjct: 320 FLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELQFVGDECQVAGDPLMLRRA 379

Query: 68  VGNLVANAIRYTPADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERLFDRFYRADPSRS 127
           + NL++NA+RYTP    I ++       +++ V NPG  I  E L RLFDRFYR DPSR 
Sbjct: 380 LSNLLSNALRYTPPGEAIVVRCQTVDHLVQVIVENPGTPIAPEHLPRLFDRFYRVDPSRQ 439

Query: 128 SAGGSSGLGLAIVRSIMMLHGGQASVTSSPGQLTVFSLRFPGR 170
             G  SG+GLAIV+SI++ H G  +VTS+  + T F +  P R
Sbjct: 440 RKGEGSGIGLAIVKSIVVAHKGTVAVTSN-ARGTRFVIVLPER 481


>ECs0608 [T] COG0642 Signal transduction histidine kinase Ecs Escherichia
           coli O157:H7
          Length = 482

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 101/163 (61%), Gaps = 2/163 (1%)

Query: 9   WXARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLVVQG-AGRLQADATLLRRA 67
           + A+A+N  ++ + + L++A E+ ++ D+FE +A++  V L   G   ++  D  +LRRA
Sbjct: 320 FLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELQFVGDECQVAGDPLMLRRA 379

Query: 68  VGNLVANAIRYTPADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERLFDRFYRADPSRS 127
           + NL++NA+RYTP    I ++       +++ V NPG  I  E L RLFDRFYR DPSR 
Sbjct: 380 LSNLLSNALRYTPPGEAIVVRCQTVDHLVQVIVENPGTPIAPEHLPRLFDRFYRVDPSRQ 439

Query: 128 SAGGSSGLGLAIVRSIMMLHGGQASVTSSPGQLTVFSLRFPGR 170
             G  SG+GLAIV+SI++ H G  +VTS+  + T F +  P R
Sbjct: 440 RKGEGSGIGLAIVKSIVVAHKGTVAVTSN-ARGTRFVIVLPER 481


>ybcZ [T] COG0642 Signal transduction histidine kinase Eco Escherichia
           coli K12
          Length = 480

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 94/148 (63%), Gaps = 1/148 (0%)

Query: 9   WXARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRL-VVQGAGRLQADATLLRRA 67
           + A+A+N  ++ + + L++A E+ ++ D+FE +A++  V L  V    ++  D  +LRRA
Sbjct: 320 FLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVGDKCQVAGDPLMLRRA 379

Query: 68  VGNLVANAIRYTPADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERLFDRFYRADPSRS 127
           + NL++NA+RYTP    I ++       +++ V NPG  I  E L RLFDRFYR DPSR 
Sbjct: 380 LSNLLSNALRYTPTGETIVVRCQTVDHLVQVIVENPGTPIAPEHLPRLFDRFYRVDPSRQ 439

Query: 128 SAGGSSGLGLAIVRSIMMLHGGQASVTS 155
             G  SG+GLAIV+SI++ H G  +VTS
Sbjct: 440 RKGEGSGIGLAIVKSIVVAHKGTVAVTS 467