BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0029.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 231 9e-61 mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 226 5e-59 AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 183 3e-46 AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 161 1e-39 AGc1163 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 117 3e-26 >AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 231 bits (590), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 124/226 (54%), Positives = 158/226 (69%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 LD++AV+AFV ADL SFTRAAE L +TQ AIS+KLK+LE RLG+RLLERTPR VRLSA+ Sbjct: 7 LDVEAVEAFVTIADLQSFTRAAETLGTTQGAISVKLKRLEDRLGQRLLERTPRSVRLSAQ 66 Query: 65 GQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVVEV 124 G FL ARE LAAH+RAL L RF +GI+ HVAG +P LA+++ DPG+ +EV Sbjct: 67 GAVFLAPAREFLAAHDRALAGLSSPRRRFGLGIAAHVAGPEVPTLLARLNDHDPGLTIEV 126 Query: 125 RVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRVATF 184 R+ S L+ ++RGE+DA I+RRE R G+++ E GW+A P + G LR+A Sbjct: 127 RMDHSRSLLDAFDRGEIDAAIIRREDDRRDGEVLGPEHFGWYATPQFEHRQGEPLRLAAL 186 Query: 185 SQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSAL 230 S AC +R ++ LDAA IAW EVF+GG V AAVSAGLA+SA Sbjct: 187 SPACGVRNIATHALDAAAIAWTEVFLGGTSSMVTAAVSAGLAISAF 232 >mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 302 Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 122/226 (53%), Positives = 158/226 (69%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 LD+DAV+AFV A+L SFTRAAEAL STQ AIS+KLK+LE R+G+RL+ERTPR VRLSA Sbjct: 3 LDVDAVKAFVAVAELRSFTRAAEALGSTQGAISVKLKRLEDRMGQRLIERTPRLVRLSAR 62 Query: 65 GQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVVEV 124 G FL ARELLAAH+RA+ L F +GI+ HV GA +P LA+++A DP + +EV Sbjct: 63 GAVFLDPARELLAAHDRAVASLAAVRRHFRLGIATHVGGAEVPTLLARLNAHDPALTIEV 122 Query: 125 RVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRVATF 184 R+ + +L+ ++RG+LDA IVRRE R G+++ E GW+A PD AG LR+A Sbjct: 123 RLDDTRELIAAFDRGDLDAAIVRREDDRRDGEVLAPEHFGWYATPDFVYRAGEPLRLAAS 182 Query: 185 SQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSAL 230 + +C IR++ LDA GI W +VF+G G AV AVSAGLAV A Sbjct: 183 APSCSIRDVITGTLDAVGIPWTQVFLGCGSFAVAEAVSAGLAVGAF 228 >AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 283 Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 147/229 (64%), Gaps = 1/229 (0%) Query: 3 KPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLS 62 + LD +AV+AF+L A+L SFT+ A + ++Q+AISL+L++LE LG RL+ERTPR+VRL+ Sbjct: 5 RSLDPEAVEAFLLVAELQSFTQVAGVMNTSQAAISLRLRRLEDMLGHRLVERTPRRVRLT 64 Query: 63 AEGQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDPGVVV 122 A G++FL AR +AA RAL+ Q P R ++G++ H+ GA LPR L V V + Sbjct: 65 AAGERFLEPARAYVAAGRRALDVFGQEPTRLAIGVTHHLIGADLPRILRVVSERVTSVTL 124 Query: 123 EVRVASSHDLMPLYERGELDAVIV-RREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRV 181 +R A + L+ LY+ GELDA++V R + R G+ + +E GW+ D + + + Sbjct: 125 HLRTAGTRTLLELYDAGELDAIVVLRHDDIRRDGEPLFQESFGWYGSADFDLRSDVPVPL 184 Query: 182 ATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSAL 230 + C +R ++LR L++A IAW EVFVG G AVGAAV AG+ V L Sbjct: 185 VLQPEPCNLRAMALRALESADIAWREVFVGTGATAVGAAVEAGIGVGLL 233 >AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 280 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 1/227 (0%) Query: 5 LDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVRLSAE 64 +DL++V+ F+L+ +L S TRAAEA + Q +S KLK LEQRLGRRL++R+PR +RL+ + Sbjct: 2 IDLESVRLFILSVELGSLTRAAEAAGTVQPVVSQKLKMLEQRLGRRLIDRSPRHLRLTED 61 Query: 65 GQQFLPAARELLAAHERALEQLDQGPVRFSVGISDHVAGASLPRALAQVHALDP-GVVVE 123 GQ FLP ARELLA HE AL D+ P+ F++ SDH G+ L A+ + A P V++ Sbjct: 62 GQVFLPKARELLAKHEDALNFSDEPPLHFALAASDHAIGSRLSAAIRAMRASLPANAVID 121 Query: 124 VRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAGGALRVAT 183 V + S + + G DA I+RR G+++ +R+GW PD + A A+ + + Sbjct: 122 VTLGFSRQVKESFASGLADAAIIRRNGGGSDGEVLRTDRLGWRVAPDWRPRANSAVPLVS 181 Query: 184 FSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSAL 230 C +R++++ L AG+ W + F G A+ V AG ++AL Sbjct: 182 LGPGCGVRDIAISELGKAGVVWRDAFTAGSCSALLEGVHAGAGIAAL 228 >AGc1163 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 316 Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 1 MEKPLDLDAVQAFVLAADLHSFTRAAEALESTQSAISLKLKKLEQRLGRRLLERTPRQVR 60 M PLD+D + F+ D SFT+AA+ + TQSA+S+++++LE+R+G++L + R R Sbjct: 1 MSAPLDIDQLHTFIAIIDTGSFTKAADRVFKTQSAVSMQMRRLEERIGKQLFAKDGRGNR 60 Query: 61 LSAEGQQFLPAARELLAAHERALEQLD----QGPVRFSVGISDHVAGASLPRALAQVHAL 116 L+AEG++ + AR ++ + A+ D +G +R +G D A +P + + Sbjct: 61 LTAEGEKLMNYARRIIRLNNEAIAAFDDNRLEGTLR--IGTPDDYADRYMPEIIGRFAKT 118 Query: 117 DPGVVVEVRVASSHDLMPLYERGELDAVIVRREPQDRGGKLVMEERIGWFAHPDAQCWAG 176 P V + + S L RGELD +V P+ R +V E + W A + Sbjct: 119 HPNVELYIVCEPSVSLAEKMARGELDIALVTHNPRARSSDVVRTEPLCWVASANHPLKDD 178 Query: 177 GALRVATFSQACRIRELSLRRLDAAGIAWVEVFVGGGILAVGAAVSAGLAVSAL 230 + +A + C R+L+ LDA G + +F V AAV AG+AVS L Sbjct: 179 APVPLAVGRRDCHWRQLACSALDADGRDYQVLFTSWSSTVVAAAVLAGMAVSVL 232