BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0020.p         (182 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...   144   1e-34
STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhi...   132   3e-31
CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri...   112   5e-25
RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...   107   1e-23
PA4597 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...   105   4e-23

>PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 485

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 102/172 (59%), Gaps = 8/172 (4%)

Query: 8   LTRTRLLLAVLPLCLTACQSLAPHYQRPAAPVAAVYPDGPVN-------EAPSPPLPWRD 60
           + R+ L LAV  + L+ C SL P YQRP APVAA YP G            P+  + WR+
Sbjct: 1   MKRSFLSLAVAAVVLSGC-SLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWRE 59

Query: 61  YFTDPPLQALITQALENSRDLRTAALRVQEAQALYGIGHADLFPTIGAQAGLDRSRTPAD 120
           +F DP LQ LI  ALEN+RDLR AAL V+  +A Y I  ADLFP IG      R R P D
Sbjct: 60  FFRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGD 119

Query: 121 LNLTRRPLVGSAYQAGLGLSSWEIDLWGRLRSLDDAALESARASQATXISAR 172
           L+ T  P + S Y   LG ++WE+DL+GRLRSL D ALE   A++    SA+
Sbjct: 120 LSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQ 171


>STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhimurium LT2
          Length = 503

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/162 (46%), Positives = 101/162 (62%), Gaps = 4/162 (2%)

Query: 15  LAVLPLCLT-ACQSLAPHYQRPAAPVAAVYP--DGPVNEAP-SPPLPWRDYFTDPPLQAL 70
           LA L    T A  ++AP ++RPA+P A VYP     V+ AP +  + WRD+F DP LQ L
Sbjct: 32  LATLAFVTTLAGCTMAPKHERPASPTAMVYPYATSTVSGAPDAADIGWRDFFHDPLLQEL 91

Query: 71  ITQALENSRDLRTAALRVQEAQALYGIGHADLFPTIGAQAGLDRSRTPADLNLTRRPLVG 130
           I  AL N+RDLR A L V+ A+ALY I  A++ PT+G    +D SRTPADL++     + 
Sbjct: 92  IAIALRNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIATAMDASRTPADLSVMDESEIN 151

Query: 131 SAYQAGLGLSSWEIDLWGRLRSLDDAALESARASQATXISAR 172
             Y+A    ++WE+DLWGR+RSL D AL +  A   T I+AR
Sbjct: 152 RRYEAAGATTAWELDLWGRVRSLSDQALAAYMALDETYIAAR 193


>CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides
          Length = 467

 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 6/169 (3%)

Query: 8   LTRTRLLLAVLPLCLTACQSLAPHYQRPAAPVAAVYPDGPVNEAPS----PPLPWRDYFT 63
           + R   L+ V    + AC +LAP Y+RP  PVA  +   P  EA +      L WR    
Sbjct: 1   MLRNFTLILVASTAVGAC-TLAPQYERPVLPVAQTWST-PAPEAATTVSAADLDWRQVLV 58

Query: 64  DPPLQALITQALENSRDLRTAALRVQEAQALYGIGHADLFPTIGAQAGLDRSRTPADLNL 123
           DP LQ ++  AL+ +RDLR A L +++A+A YG+  + LFP +       R RTPA  + 
Sbjct: 59  DPRLQGVVDLALQQNRDLRVAVLNIEKARAQYGVQRSALFPGVSGAVSEQRGRTPASTSP 118

Query: 124 TRRPLVGSAYQAGLGLSSWEIDLWGRLRSLDDAALESARASQATXISAR 172
           T +P     + A +G +++E+DL+GR+RSL DAAL+S  A++ T  S R
Sbjct: 119 TGQPFETDVFNATIGFTAYELDLFGRVRSLKDAALQSYLATEQTSRSVR 167


>RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 491

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 82/136 (60%), Gaps = 4/136 (2%)

Query: 45  DGPVNEAPSPPLPWRDYFTDPPLQALITQALENSRDLRTAALRVQEAQALYGIGHADLFP 104
           DG     P   + WRD FTDP LQ +I  AL N+RDLR A L +++A+A Y +  A LFP
Sbjct: 46  DGTRAATPVAEIGWRDVFTDPSLQRVIDLALANNRDLRVAVLNLEKARAQYRVQDAALFP 105

Query: 105 TIGAQAGLDRSRTPADLNLTRRPLVGSAYQAGLGLSSWEIDLWGRLRSLDDAALESARAS 164
           T+ A      SRTPA L+ T +P+V   Y A LG S++E+DL+GR+RSL   ALE   A+
Sbjct: 106 TVKASGSESASRTPAALSATGQPVVSHTYSATLGFSAYELDLFGRVRSLSAQALEQYLAT 165

Query: 165 QATXISARRARPSSPV 180
               + ARR+   S V
Sbjct: 166 ----VEARRSSQISLV 177


>PA4597 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 479

 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 86/145 (59%), Gaps = 3/145 (2%)

Query: 17  VLPLCLTACQSLAPHYQRPAAPVAAVYPDGPVNEAPS--PPLPWRDYFTDPPLQALITQA 74
           ++ L L AC S+AP Y+RPAAPVA  +         +    L W+ +  D  L+ L+  A
Sbjct: 12  LIALTLGAC-SMAPTYERPAAPVADSWSGAAAQRQGAAIDTLDWKSFIVDAELRRLVDMA 70

Query: 75  LENSRDLRTAALRVQEAQALYGIGHADLFPTIGAQAGLDRSRTPADLNLTRRPLVGSAYQ 134
           L+N+R LR   L ++ A+A Y I  AD  P + A A  +R R PADL+   R  V S+YQ
Sbjct: 71  LDNNRSLRQTLLDIEAARAQYRIQRADRVPGLNAAATGNRQRQPADLSAGNRSEVASSYQ 130

Query: 135 AGLGLSSWEIDLWGRLRSLDDAALE 159
            GL L  +E+DL+GR++SL DAAL+
Sbjct: 131 VGLALPEYELDLFGRVKSLTDAALQ 155