BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0019.p         (164 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...   146   2e-35
RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...   145   5e-35
RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...   137   9e-33
RSp0311 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...   130   1e-30
CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri...   127   1e-29

>PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 485

 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 99/147 (67%)

Query: 1   LTGNVGTASAELSGLFRDGSHAWTFSPSITLPIFTAGRLRNNLALSEVRRDLAVAAYEKT 60
           LT N GT S +LSGLF  GS +W F PSI LPIFTAG LR +L  +++++D+ VA YEK 
Sbjct: 319 LTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKA 378

Query: 61  VQTAFREVADALAARQWLTQQLEIAQSAVRVQRERARLSALRYDNGAAPFLDVLDAQRDL 120
           +QTAF+EVAD LAAR   T+QL+  +  V+   E  +L+  RY  G   +L +LDAQR L
Sbjct: 379 IQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLLDAQRSL 438

Query: 121 LSAQQQLVQIRRALLSSSVALYAALGG 147
            +AQQQL+  R   L+S V LY ALGG
Sbjct: 439 FTAQQQLITDRLNQLTSEVNLYKALGG 465


>RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 514

 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/147 (53%), Positives = 98/147 (66%)

Query: 1   LTGNVGTASAELSGLFRDGSHAWTFSPSITLPIFTAGRLRNNLALSEVRRDLAVAAYEKT 60
           LT NVGTAS  L  LF+ G+  W+F P++TLPIF  G    NL L++  + +AVA YEKT
Sbjct: 333 LTSNVGTASTALHDLFKSGTGLWSFVPNLTLPIFNWGTNVFNLDLTKANQKIAVANYEKT 392

Query: 61  VQTAFREVADALAARQWLTQQLEIAQSAVRVQRERARLSALRYDNGAAPFLDVLDAQRDL 120
           +QTAF+EV+DAL AR  L +Q+   +       ER  LS  RY NG + FLDVLDAQRDL
Sbjct: 393 IQTAFQEVSDALVARGTLDEQVAAQKRFRDATAERLTLSDQRYRNGVSSFLDVLDAQRDL 452

Query: 121 LSAQQQLVQIRRALLSSSVALYAALGG 147
            SA Q LVQ R A L+++V LY ALGG
Sbjct: 453 FSADQTLVQTRLARLTNAVDLYTALGG 479


>RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 491

 Score =  137 bits (346), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 102/162 (62%)

Query: 1   LTGNVGTASAELSGLFRDGSHAWTFSPSITLPIFTAGRLRNNLALSEVRRDLAVAAYEKT 60
           LT + GT+SA L+GLF+ GS  W+F P I+LPIF  G  R NL ++   RD+A+A YEK 
Sbjct: 326 LTASAGTSSASLAGLFKGGSGVWSFGPQISLPIFDGGANRANLDIANASRDIALAQYEKA 385

Query: 61  VQTAFREVADALAARQWLTQQLEIAQSAVRVQRERARLSALRYDNGAAPFLDVLDAQRDL 120
           +QTAFREV+DALA R  L +QL+  QS V    +  +L+  R+  G   +L+VLD+QR L
Sbjct: 386 IQTAFREVSDALAQRGTLGRQLDAQQSLVDATSDSYQLATARFKRGVDSYLNVLDSQRSL 445

Query: 121 LSAQQQLVQIRRALLSSSVALYAALGGEGVAAVPSPPSPSRS 162
            +AQQ L+  R + L++    Y  LGG  V    +P + +RS
Sbjct: 446 YTAQQNLINTRLSRLTNLATFYKTLGGGWVETSGAPVAAARS 487


>RSp0311 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 476

 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 94/147 (63%)

Query: 1   LTGNVGTASAELSGLFRDGSHAWTFSPSITLPIFTAGRLRNNLALSEVRRDLAVAAYEKT 60
           LT ++G AS  +  LF  G   W+FSP IT P+F  GRLR  L L+E+R+  A+A YE+T
Sbjct: 314 LTASLGYASPAMGSLFDGGHRVWSFSPQITQPLFQGGRLRAELRLAELRKSSAIAEYERT 373

Query: 61  VQTAFREVADALAARQWLTQQLEIAQSAVRVQRERARLSALRYDNGAAPFLDVLDAQRDL 120
           +QTAFREVAD LA R    +Q+E    AV     R  LS LRY  G    L++LD+QR L
Sbjct: 374 IQTAFREVADGLAGRATYGRQIEAQIRAVASAERRVELSNLRYRAGVEGRLELLDSQRQL 433

Query: 121 LSAQQQLVQIRRALLSSSVALYAALGG 147
            +++Q L+ +R+   S++VALY ALGG
Sbjct: 434 YASRQALLDLRQGAFSNAVALYKALGG 460


>CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides
          Length = 467

 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 92/147 (62%)

Query: 1   LTGNVGTASAELSGLFRDGSHAWTFSPSITLPIFTAGRLRNNLALSEVRRDLAVAAYEKT 60
           LTG+ G+AS +L GLF+ G+  W+F+P I+LPIF  G    NL +S+  RD+AVA YEKT
Sbjct: 316 LTGSAGSASTDLDGLFKSGTSIWSFTPQISLPIFAGGANVANLNISKADRDIAVATYEKT 375

Query: 61  VQTAFREVADALAARQWLTQQLEIAQSAVRVQRERARLSALRYDNGAAPFLDVLDAQRDL 120
           VQTAFREV+DAL+ R  +  +L   +       +  RLS  R D G    L +LDAQR L
Sbjct: 376 VQTAFREVSDALSVRATVADRLTAQERLTAAAADSTRLSQQRRDAGLDSALTLLDAQRSL 435

Query: 121 LSAQQQLVQIRRALLSSSVALYAALGG 147
            +AQQ L+  R A  ++ V LY  LGG
Sbjct: 436 YTAQQGLISARLAQATNLVTLYKTLGG 462