BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0002.p (306 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0618 Non COG 340 2e-93 ZyaiD [L] COG2974 DNA recombination-dependent growth factor C Ec... 201 1e-51 ECs0445 [L] COG2974 DNA recombination-dependent growth factor C ... 201 1e-51 rdgC [L] COG2974 DNA recombination-dependent growth factor C Eco... 201 2e-51 STM0392 [L] COG2974 DNA recombination-dependent growth factor C ... 197 3e-50 >RSc0618 Non COG Length = 307 Score = 340 bits (873), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 159/294 (54%), Positives = 210/294 (71%) Query: 2 FKNAIIYRLPAPWAITAEDLSRYLAPQAFTPLGGLDMQCMGWMRPREDGMLVHQVNRQFL 61 FKN ++RLPAPWA+ + + ++LAP AF P ++ QC GW PR+DG LV+ +NRQ L Sbjct: 3 FKNLQLHRLPAPWAVAPDQIEKWLAPHAFQPGNSVEKQCSGWASPRDDGALVYSINRQML 62 Query: 62 LRLQIEKKILPSSVINQVTRERAKELEEQQGFPPGRKQTKELKEQITDELLPRAFTRLSG 121 L + EKK+LP+SV+NQVT+ RA E+EEQQGF GRKQ +ELKEQ+TDELLPRAFT Sbjct: 63 LVFRAEKKLLPASVVNQVTKARALEVEEQQGFKLGRKQLRELKEQVTDELLPRAFTIRRD 122 Query: 122 MWIWIDPVNGWLVADSSTPAKAEDALKLLFKAVPKFPLEPVRTVMHPGAAMTDWLASDEA 181 +WID NGWLV D++ A +D LL K++ + PL VR + P AAMTDWL S EA Sbjct: 123 TRVWIDTANGWLVIDAAAQALGDDVRGLLVKSIDQLPLASVRVALSPVAAMTDWLLSGEA 182 Query: 182 PDSFTVDQDTELRSTAESKATVRYVRHTLEANQIRQHIETGKQCTRLALTWADKISFTLA 241 P FTVDQD ELRS+ E ATVRYV H LEA+ +R+HIE GKQC RLA+TW ++ISF L Sbjct: 183 PGGFTVDQDAELRSSGEGGATVRYVGHALEADDMRRHIEAGKQCVRLAMTWDNRISFVLT 242 Query: 242 DNLSIKKIALLDVLKEDVGAIGKNEDERFDGNFLLFSGEMSKLLADLIAAVGGE 295 +L+IK++ LDV+KE +N+DERF+ + L +GE+ ++L DL+ +GG+ Sbjct: 243 PSLTIKRVTPLDVIKEAADPTAQNDDERFESDVALMTGELGRMLTDLVDILGGD 296 >ZyaiD [L] COG2974 DNA recombination-dependent growth factor C EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 167/297 (56%), Gaps = 3/297 (1%) Query: 2 FKNAIIYRLPAPWAITAEDLSRYLAPQAFTPLGGLDMQCMGWMRP--REDGMLVHQVNRQ 59 FKN ++YRL ++ AE++ + LA AFTP G DM MGW+ P L H N Q Sbjct: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 Query: 60 FLLRLQIEKKILPSSVINQVTRERAKELEEQQGFPPGRKQTKELKEQITDELLPRAFTRL 119 ++ + E+KILPS VI Q + +LE +Q + + LK+++ LLPRAF+R Sbjct: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 Query: 120 SGMWIWIDPVNGWLVADSSTPAKAEDALKLLFKAVPKFPLEPVRTVMHPGAAMTDWLASD 179 S +WID VNG ++ D ++ KAED L LL K++ P+ P+ +T+W+ S Sbjct: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMANPIELTLTEWVRSG 183 Query: 180 EAPDSFTVDQDTELRSTAESKATVRYVRHTLEANQIRQHIETGKQCTRLALTWADKISFT 239 A F + + EL+S E +R + L + +I HIE GK T+LAL W +I F Sbjct: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 Query: 240 LADNLSIKKIALLDVLKEDVGAIGKNE-DERFDGNFLLFSGEMSKLLADLIAAVGGE 295 + D+ S+K++ D L++ I + + +RFD +F+L +GE++ L+ +LI +GGE Sbjct: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >ECs0445 [L] COG2974 DNA recombination-dependent growth factor C Ecs Escherichia coli O157:H7 Length = 303 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 167/297 (56%), Gaps = 3/297 (1%) Query: 2 FKNAIIYRLPAPWAITAEDLSRYLAPQAFTPLGGLDMQCMGWMRP--REDGMLVHQVNRQ 59 FKN ++YRL ++ AE++ + LA AFTP G DM MGW+ P L H N Q Sbjct: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 Query: 60 FLLRLQIEKKILPSSVINQVTRERAKELEEQQGFPPGRKQTKELKEQITDELLPRAFTRL 119 ++ + E+KILPS VI Q + +LE +Q + + LK+++ LLPRAF+R Sbjct: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 Query: 120 SGMWIWIDPVNGWLVADSSTPAKAEDALKLLFKAVPKFPLEPVRTVMHPGAAMTDWLASD 179 S +WID VNG ++ D ++ KAED L LL K++ P+ P+ +T+W+ S Sbjct: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMANPIELTLTEWVRSG 183 Query: 180 EAPDSFTVDQDTELRSTAESKATVRYVRHTLEANQIRQHIETGKQCTRLALTWADKISFT 239 A F + + EL+S E +R + L + +I HIE GK T+LAL W +I F Sbjct: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 Query: 240 LADNLSIKKIALLDVLKEDVGAIGKNE-DERFDGNFLLFSGEMSKLLADLIAAVGGE 295 + D+ S+K++ D L++ I + + +RFD +F+L +GE++ L+ +LI +GGE Sbjct: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >rdgC [L] COG2974 DNA recombination-dependent growth factor C Eco Escherichia coli K12 Length = 303 Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 167/297 (56%), Gaps = 3/297 (1%) Query: 2 FKNAIIYRLPAPWAITAEDLSRYLAPQAFTPLGGLDMQCMGWMRP--REDGMLVHQVNRQ 59 FKN ++YRL ++ AE++ + LA AFTP G DM MGW+ P L H N Q Sbjct: 4 FKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQ 63 Query: 60 FLLRLQIEKKILPSSVINQVTRERAKELEEQQGFPPGRKQTKELKEQITDELLPRAFTRL 119 ++ + E+KILPS VI Q + +LE +Q + + LK+++ LLPRAF+R Sbjct: 64 IVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRF 123 Query: 120 SGMWIWIDPVNGWLVADSSTPAKAEDALKLLFKAVPKFPLEPVRTVMHPGAAMTDWLASD 179 S +WID VNG ++ D ++ KAED L LL K++ P+ P+ +T+W+ S Sbjct: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSG 183 Query: 180 EAPDSFTVDQDTELRSTAESKATVRYVRHTLEANQIRQHIETGKQCTRLALTWADKISFT 239 A F + + EL+S E +R + L + +I HIE GK T+LAL W +I F Sbjct: 184 SAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFV 243 Query: 240 LADNLSIKKIALLDVLKEDVGAIGKNE-DERFDGNFLLFSGEMSKLLADLIAAVGGE 295 + D+ S+K++ D L++ I + + +RFD +F+L +GE++ L+ +LI +GGE Sbjct: 244 MCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE 300 >STM0392 [L] COG2974 DNA recombination-dependent growth factor C Sty Salmonella typhimurium LT2 Length = 303 Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 105/297 (35%), Positives = 165/297 (55%), Gaps = 3/297 (1%) Query: 2 FKNAIIYRLPAPWAITAEDLSRYLAPQAFTPLGGLDMQCMGWMRP--REDGMLVHQVNRQ 59 FKN ++YRL + AE++ + LA FTP G DM MGW+ P L H N Q Sbjct: 4 FKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTANGQ 63 Query: 60 FLLRLQIEKKILPSSVINQVTRERAKELEEQQGFPPGRKQTKELKEQITDELLPRAFTRL 119 ++ + E+KILPS VI Q + ++LE QG + + LK+++ LLPRAF+R Sbjct: 64 IIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFSRF 123 Query: 120 SGMWIWIDPVNGWLVADSSTPAKAEDALKLLFKAVPKFPLEPVRTVMHPGAAMTDWLASD 179 S +WID VNG ++ D ++ KAED L LL K++ P+ P+ +T+W+ S Sbjct: 124 SQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIELTLTEWVRSG 183 Query: 180 EAPDSFTVDQDTELRSTAESKATVRYVRHTLEANQIRQHIETGKQCTRLALTWADKISFT 239 F + + EL++ E +R + L +++I HIE GK T+LAL W +I F Sbjct: 184 TVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRIQFV 243 Query: 240 LADNLSIKKIALLDVLKEDVGAIGKNE-DERFDGNFLLFSGEMSKLLADLIAAVGGE 295 + D+ SIK++ D L++ I + + +RFD +F+L +GE++ L+ L+ +GGE Sbjct: 244 MCDDGSIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLGGE 300