BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0354.p (228 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2935 [TK] COG0745 Response regulators consisting of a CheY-li... 194 2e-49 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 191 9e-49 RSc3392 [TK] COG0745 Response regulators consisting of a CheY-li... 187 2e-47 STM2785 [TK] COG0745 Response regulators consisting of a CheY-li... 187 2e-47 mll7953 [TK] COG0745 Response regulators consisting of a CheY-li... 174 2e-43 >RSc2935 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 235 Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/218 (50%), Positives = 147/218 (67%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILLVED+ +++ L RAL + GF V ADG++A + + G D VVLDL +P DG Sbjct: 1 MRILLVEDEGELAAWLARALAQSGFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGF 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 +L +R++D TPV++LTA+GA+ +RV GLNAGADD+L KPF L EL+AR+ AL+RR Sbjct: 61 AVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRRSR 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 RCG L FD G AF +PL LTPREH L AL+ K G ++K LF VF Sbjct: 121 GRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 218 ++ + +A+EVVVHR+RKKL +G +I+T+RGLGYLL Sbjct: 181 LDSDSSPDAVEVVVHRLRKKLAGSGVQIVTVRGLGYLL 218 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 144/218 (66%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M ILLVED ++ ++++AL+ G+ V DG++A + L +LD+ +P +DG Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 +L R+R + PV++LTARG V DRV GLN GADDYLAKPF+L EL+AR++ALLRR Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 + +QRCG L +D G+ F + PL LT RE +L+A+IA+PG ++KE+L VF Sbjct: 121 LGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFG 180 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 218 ++E +AIE+ VHR+RKKL I+T RGLGYLL Sbjct: 181 LDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLL 218 >RSc3392 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 104/224 (46%), Positives = 141/224 (62%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M +LL+ED+ +++ L AL R F V H +DG SA + + D+V+LDL +P L G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 +LQR+R + PV++LTA G + D+V L AGADDYL KPF++ EL ARI+ L+RR T Sbjct: 61 AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 A+ +CG L + GS F PL L REHT+L+ L+ K G V+K L VF Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQ 224 +E+ EAIE+ +HR+RKKL + A I+TLRGLGYLLRD Q Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAATIVTLRGLGYLLRDASTQ 224 >STM2785 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 224 Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 1/218 (0%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M +LL ED+ +++ L +AL + GF V DG++A + + L VLD+N+PG+DGL Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 ++QR+R + PV++LTAR AV DRV GLN GADDYL KPF+L+ELDAR+RALLRR Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 VQ+ G L F G F PL LTPRE LL L+ + V++++LF VF Sbjct: 121 GQVHEVQQLGELIF-HDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLL 218 + + E+IE+ +HR+RKKL + I TLRGLGY+L Sbjct: 180 LNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVL 217 >mll7953 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 223 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 134/223 (60%) Query: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 M +LLVED+ +++ L + L + + V DG + G LV+LDL +P + GL Sbjct: 1 MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60 Query: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 +L+ +R++ PVIVLTA ++ RV GLN GADDYLAKPF ++EL+ARIRA LRR Sbjct: 61 EVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120 Query: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 + V CG L FD + F +PL LTPREH +L+ L+ K G V+K L ++ Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180 Query: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQ 223 E AIE+ VHRVRKKL + +I TLRGLGYLLR Q Sbjct: 181 FETDADPSAIEIYVHRVRKKLEGSRVQIATLRGLGYLLRHEDQ 223