BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0345.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2031 [O] COG2371 Urease accessory protein UreE Rso Ralstonia ...   117   9e-27
PA4891 [O] COG2371 Urease accessory protein UreE Pae Pseudomonas...   103   3e-22
alr0733 [O] COG2371 Urease accessory protein UreE Nos Nostoc sp....    92   5e-19
ZureE.2 [O] COG2371 Urease accessory protein UreE EcZ Escherichi...    89   3e-18
ZureE [O] COG2371 Urease accessory protein UreE EcZ Escherichia ...    89   3e-18

>RSc2031 [O] COG2371 Urease accessory protein UreE Rso Ralstonia
           solanacearum
          Length = 211

 Score =  117 bits (294), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 84/132 (63%), Gaps = 4/132 (3%)

Query: 17  ELELPYDQREKSRLRATLRSGEDVAVFTVRGTVLRDGDLLRGDDGRVVKIIAKAEATYRV 76
           +L LP+  R +SRLRATL  G +VAV   RGTV+R GD+L  +DG +V++ A  E   RV
Sbjct: 24  KLVLPFLARSRSRLRATLDDGREVAVVLPRGTVMRGGDVLVAEDGTLVEVQAAPEQVLRV 83

Query: 77  DAADAHLLLRCAFHLGNRHTQAHVGQEGGVGFLRIRKDPVLKEMLEGLGARVTEELAAFE 136
            +     L+R A+HLGNRHT   V  +     L++  DPVL++ML  LG  VT   A FE
Sbjct: 84  TSDSRLALMRAAYHLGNRHTPVQVVADA----LQLEADPVLEDMLVRLGVTVTHVQAPFE 139

Query: 137 PEAGAYGGGHHH 148
           PEAGAYGGGH H
Sbjct: 140 PEAGAYGGGHRH 151


>PA4891 [O] COG2371 Urease accessory protein UreE Pae Pseudomonas
           aeruginosa
          Length = 167

 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 6/140 (4%)

Query: 1   MLTLNTKI-AQAERIDGELELPYDQREKSRLRATLRSGEDVAVFTVRGT-VLRDGDLLRG 58
           ML ++ ++ A++ R D EL L Y+ R KSRLR    SGE+V +F  RG   L DGD L  
Sbjct: 1   MLVIHQRLPARSPRWDEELHLTYEARSKSRLRCFAASGEEVGLFLERGQPPLADGDCLEA 60

Query: 59  DDGRVVKIIAKAEATYRVDAADAHLLLRCAFHLGNRHTQAHVGQEGGVGFLRIRKDPVLK 118
            DGR+V+++A++E    V  A    L R A+HLGNRH    VG     G+LR+  D VLK
Sbjct: 61  RDGRLVRVVARSERLLHVTCASPLELTRAAYHLGNRHVALQVGD----GWLRLLDDYVLK 116

Query: 119 EMLEGLGARVTEELAAFEPE 138
            MLE LGA V    A F+PE
Sbjct: 117 AMLEQLGATVEAIEAPFQPE 136


>alr0733 [O] COG2371 Urease accessory protein UreE Nos Nostoc sp. PCC 7120
          Length = 147

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 9/151 (5%)

Query: 1   MLTLNTKIAQAE--RIDGELELPYDQREKSRLRATLRSGEDVAVFTVRGTVLRDGDLLRG 58
           MLTL   +       I   L L  ++R +SR R     G+ V +   RGT+L+DGD+L+ 
Sbjct: 1   MLTLTQLVTPNPDVAITLTLFLTAEERCRSRHRFETEDGQVVFLRLPRGTLLQDGDILQD 60

Query: 59  D-DGRVVKIIAKAEATYRVDAADAHLLLRCAFHLGNRHTQAHVGQEGGVGFLRIRKDPVL 117
           + +G +++I AK E      A    LL+R A+HLGNRH    V  E    +LR+  D VL
Sbjct: 61  ETNGNLIRIAAKPEPVLTAVAQTQLLLMRAAYHLGNRH----VPVEITPTYLRLSPDTVL 116

Query: 118 KEMLEGLGARVTEELAAFEPEAGAYGGGHHH 148
           + MLE +G  +T E+  F+PE GAY  GHHH
Sbjct: 117 RTMLEHMGLEITAEILPFQPELGAY--GHHH 145


>ZureE.2 [O] COG2371 Urease accessory protein UreE EcZ Escherichia coli
           O157:H7 EDL933
          Length = 154

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 1   MLTLNTKIAQAERIDGELELPYDQREKSRLRATLRSGEDVAVFTVRGTVLRDGDLLRGDD 60
           ML L  ++    +    + LP D R KSR++ TL  G    +   RG +LRDGD+L  ++
Sbjct: 1   MLYLTRRVETPAQTTASVTLPVDMRVKSRIKVTLNDGRQAGLLLPRGLLLRDGDILSNEN 60

Query: 61  G-RVVKIIAKAEATYRVDAADAHLLLRCAFHLGNRHTQAHVGQEGGVGFLRIRKDPVLKE 119
           G   +K+IA  EA   V  AD  +L +  +HLGNRH    +      G LR   D VL +
Sbjct: 61  GDEFIKVIAADEAVSVVRCADPFMLAKACWHLGNRHVPLQIMP----GELRYHHDHVLDD 116

Query: 120 MLEGLGARVTEELAAFEPEAGAYGGGHHHHGDDHHHN 156
           ML   G  V      FEPEAGAY    H H  D  H+
Sbjct: 117 MLRQFGLDVDFAHLPFEPEAGAYASKSHAHNHDQEHS 153


>ZureE [O] COG2371 Urease accessory protein UreE EcZ Escherichia coli
           O157:H7 EDL933
          Length = 154

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 1   MLTLNTKIAQAERIDGELELPYDQREKSRLRATLRSGEDVAVFTVRGTVLRDGDLLRGDD 60
           ML L  ++    +    + LP D R KSR++ TL  G    +   RG +LRDGD+L  ++
Sbjct: 1   MLYLTRRVETPAQTTASVTLPVDMRVKSRIKVTLNDGRQAGLLLPRGLLLRDGDILSNEN 60

Query: 61  G-RVVKIIAKAEATYRVDAADAHLLLRCAFHLGNRHTQAHVGQEGGVGFLRIRKDPVLKE 119
           G   +K+IA  EA   V  AD  +L +  +HLGNRH    +      G LR   D VL +
Sbjct: 61  GDEFIKVIAADEAVSVVRCADPFMLAKACWHLGNRHVPLQIMP----GELRYHHDHVLDD 116

Query: 120 MLEGLGARVTEELAAFEPEAGAYGGGHHHHGDDHHHN 156
           ML   G  V      FEPEAGAY    H H  D  H+
Sbjct: 117 MLRQFGLDVDFAHLPFEPEAGAYASKSHAHNHDQEHS 153